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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032666 through 18771 annotations produced 1 hits


Annotation Number : CG5758
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032666
Gbrowse : chr2L:18120026-18128944 (+) // 100.0 //
Probeset : 1641236_s_at
Accessions : protein= NP_609866; /// NP_724091; /// NP_724092;, nucleotide= NM_136022; /// NM_165239; /// NM_165240;
FlyMine data for FBgn0032666.
VDRC has 2 RNAi stocks for FBgn0032666 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1161 344 of 424.60Up
Head501 444 of 410.60Up
Eye306 274 of 4 6.51Up
Thoracicoabdominal ganglion1045 694 of 422.20Up
Salivary gland14 40 of 4 0.31Down
Crop64 54 of 4 1.40None
Midgut14 11 of 4 0.30Down
Tubule22 44 of 4 0.50Down
Hindgut25 14 of 4 0.50Down
Heart28 44 of 4 0.61Down
Fat body20 22 of 4 0.43Down
Ovary5 12 of 4 0.10Down
Testis15 14 of 4 0.30Down
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca8 11 of 4 0.19Down
Mated spermatheca5 00 of 4 0.12Down
Adult carcass104 44 of 4 2.20Up
Larval CNS271 474 of 4 5.75Up
Larval Salivary gland12 23 of 4 0.27Down
Larval midgut19 21 of 4 0.41Down
Larval tubule10 04 of 4 0.20Down
Larval hindgut14 14 of 4 0.31Down
Larval fat body15 53 of 4 0.30Down
Larval trachea304 544 of 4 6.46Up
Larval carcass16 13 of 4 0.35Down
S2 cells (growing)56 14 of 4 1.21Up
Whole fly47 24 of 4

Looking for FBgn0032666. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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