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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032671 through 18771 annotations produced 1 hits



(CG7200):

Annotation Number : CG7200
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032671
Gbrowse : chr2L:18157109-18158676 (-) // 100.0 //
Probeset : 1628638_at
Accessions : protein= NP_609870;, nucleotide= NM_136026;
FlyMine data for FBgn0032671.
BDGP gene expression has embryonic in situ data for CG7200: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0032671 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032671 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain67 ± 24 of 4 0.60Down
Head54 ± 14 of 4 0.40Down
Eye79 ± 34 of 4 0.65Down
Thoracicoabdominal ganglion72 ± 24 of 4 0.60Down
Salivary gland69 ± 84 of 4 0.57Down
Crop79 ± 44 of 4 0.70Down
Midgut111 ± 24 of 4 0.90None
Tubule105 ± 64 of 4 0.90Down
Hindgut55 ± 34 of 4 0.50Down
Heart75 ± 34 of 4 0.62Down
Fat body69 ± 74 of 4 0.57Down
Ovary238 ± 84 of 4 2.00Up
Testis187 ± 114 of 4 1.50Up
Male accessory glands70 ± 64 of 4 0.60Down
Virgin spermatheca193 ± 14 of 4 1.59Up
Mated spermatheca167 ± 134 of 4 1.37Up
Adult carcass62 ± 44 of 4 0.50Down
Larval CNS275 ± 154 of 4 2.26Up
Larval Salivary gland184 ± 114 of 4 1.52Up
Larval midgut95 ± 24 of 4 0.78Down
Larval tubule198 ± 94 of 4 1.60Up
Larval hindgut141 ± 24 of 4 1.16Up
Larval fat body244 ± 44 of 4 2.00Up
Larval trachea188 ± 154 of 4 1.55Up
Larval carcass140 ± 114 of 4 1.15None
S2 cells (growing)175 ± 24 of 4 1.44Up
Whole fly121 ± 64 of 4

Looking for FBgn0032671. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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