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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032679 through 18771 annotations produced 1 hits



chr2L:18449513-18454587 (-) // 100.0 // (bicoid stability factor):

Annotation Number : CG10302
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627461_at
Accessions : protein= , nucleotide= NP_523596;
Interpro : 0005737 // cytoplasm // inferred from direct assay
FlyMine data for full length.
Homophila reports that CG10302 is a close match (5e-83) to human gene LRP130;LRPPRC;LSFC (NP_573566), a gene associated with Leigh syndrome, French-Canadian type, 220111 (3).
BioGrid reports that CG10302 interacts with CG17158 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain222 ± 74 of 4 1.10Up
Head128 ± 44 of 4 0.60Down
Eye96 ± 74 of 4 0.47Down
Thoracicoabdominal ganglion287 ± 124 of 4 1.40Up
Salivary gland153 ± 64 of 4 0.75Down
Crop171 ± 14 of 4 0.80Down
Midgut131 ± 104 of 4 0.60Down
Tubule139 ± 124 of 4 0.70Down
Hindgut187 ± 74 of 4 0.90None
Heart124 ± 54 of 4 0.61Down
Fat body155 ± 44 of 4 0.76Down
Ovary394 ± 144 of 4 1.90Up
Testis88 ± 34 of 4 0.40Down
Male accessory glands145 ± 154 of 4 0.70Down
Virgin spermatheca111 ± 64 of 4 0.54Down
Mated spermatheca130 ± 54 of 4 0.63Down
Adult carcass121 ± 114 of 4 0.60Down
Larval CNS279 ± 114 of 4 1.36Up
Larval Salivary gland226 ± 184 of 4 1.10None
Larval midgut106 ± 94 of 4 0.52Down
Larval tubule60 ± 04 of 4 0.30Down
Larval hindgut343 ± 374 of 4 1.68Up
Larval fat body42 ± 44 of 4 0.20Down
Larval trachea267 ± 474 of 4 1.31None
Larval carcass172 ± 384 of 4 0.84None
S2 cells (growing)339 ± 64 of 4 1.66Up
Whole fly205 ± 74 of 4

Looking for FBgn0032679. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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