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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032681 through 18771 annotations produced 1 hits



(CG10283):

Annotation Number : CG10283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032681
Gbrowse : chr2L:18472952-18484511 (-) // 100.0 //
Probeset : 1631175_a_at
Accessions : protein= NP_001163006; /// NP_001163007; /// NP_609879; /// NP_724113;, nucleotide= NM_001169535; /// NM_001169536; /// NM_136035; /// NM_165255;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032681.
BDGP gene expression has embryonic in situ data for CG10283: 7 pix of staining in 4 body parts.
BioGrid reports that CG10283 interacts with CG11799 CG4841 CG7135 .
VDRC has 1 RNAi stocks for FBgn0032681 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain108 84 of 4 2.40Up
Head78 84 of 4 1.80Up
Eye196 184 of 4 4.42Up
Thoracicoabdominal ganglion60 44 of 4 1.40Up
Salivary gland189 194 of 4 4.27Up
Crop56 14 of 4 1.30Up
Midgut36 13 of 4 0.80None
Tubule12 10 of 4 0.30Down
Hindgut36 04 of 4 0.80None
Heart12 14 of 4 0.28Down
Fat body5 20 of 4 0.12Down
Ovary42 24 of 4 1.00None
Testis9 22 of 4 0.20Down
Male accessory glands34 24 of 4 0.80None
Virgin spermatheca2 00 of 4 0.05Down
Mated spermatheca4 10 of 4 0.09Down
Adult carcass26 52 of 4 0.60None
Larval CNS107 94 of 4 2.41Up
Larval Salivary gland62 24 of 4 1.40Up
Larval midgut10 21 of 4 0.24Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut18 12 of 4 0.42Down
Larval fat body16 30 of 4 0.40Down
Larval trachea134 74 of 4 3.03Up
Larval carcass46 34 of 4 1.04None
S2 cells (growing)13 04 of 4 0.30Down
Whole fly44 34 of 4

Looking for FBgn0032681. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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