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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032689 through 18771 annotations produced 1 hits



(CG10413):

Annotation Number : CG10413
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032689
Gbrowse : chr2L:18599748-18605021 (-) // 100.0 //
Probeset : 1635914_at
Accessions : protein= NP_609887;, nucleotide= NM_136043;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0008511 // sodium:potassium:chloride symporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0032689.
BDGP gene expression has embryonic in situ data for CG10413: 23 pix of staining in 11 body parts.
Homophila reports that CG10413 is a close match (6e-54) to human gene SLC12A1;NKCC2 (NP_000329), a gene associated with Bartter syndrome, type 1, 601678 (3).
BioGrid reports that CG10413 interacts with CG14030 .
TRiP has 1 RNAi stocks for FBgn0032689 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032689 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain424 ± 114 of 4 1.10None
Head346 ± 214 of 4 0.90None
Eye464 ± 134 of 4 1.25Up
Thoracicoabdominal ganglion509 ± 194 of 4 1.40Up
Salivary gland797 ± 234 of 4 2.15Up
Crop460 ± 44 of 4 1.20Up
Midgut554 ± 104 of 4 1.50Up
Tubule741 ± 164 of 4 2.00Up
Hindgut536 ± 84 of 4 1.40Up
Heart1289 ± 504 of 4 3.47Up
Fat body427 ± 114 of 4 1.15None
Ovary528 ± 74 of 4 1.40Up
Testis217 ± 74 of 4 0.60Down
Male accessory glands858 ± 124 of 4 2.30Up
Virgin spermatheca1014 ± 594 of 4 2.73Up
Mated spermatheca1025 ± 154 of 4 2.76Up
Adult carcass288 ± 164 of 4 0.80Down
Larval CNS397 ± 254 of 4 1.07None
Larval Salivary gland345 ± 124 of 4 0.93None
Larval midgut1048 ± 624 of 4 2.82Up
Larval tubule609 ± 84 of 4 1.60Up
Larval hindgut745 ± 364 of 4 2.01Up
Larval fat body273 ± 164 of 4 0.70Down
Larval trachea583 ± 194 of 4 1.57Up
Larval carcass510 ± 164 of 4 1.37Up
S2 cells (growing)438 ± 104 of 4 1.18None
Whole fly371 ± 254 of 4

Looking for FBgn0032689. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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