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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032693 through 18771 annotations produced 1 hits


Cyp310a1 (Cyp310a1):

Annotation Number : CG10391
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032693
Gbrowse : chr2L:18651056-18652984 (-) // 100.0 //
Probeset : 1625114_at
Accessions : protein= NP_609891;, nucleotide= NM_136047;
Pathway : 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane //
Interpro : 0004497 // monooxygenase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred fro
FlyMine data for FBgn0032693.
BDGP gene expression has embryonic in situ data for Cyp310a1: 67 pix of staining in 12 body parts.
Homophila reports that CG10391 is a close match (5e-12) to human gene CYP2R1 (NP_078790), a gene associated with Rickets due to defect in vitamin D 25-hydroxylation, 600081 (3).
VDRC has 1 RNAi stocks for FBgn0032693 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland7 ± 40 of 4 0.37None
Crop4 ± 10 of 4 0.20Down
Midgut3 ± 10 of 4 0.20Down
Tubule157 ± 164 of 4 7.80Up
Hindgut4 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.07Down
Fat body2 ± 10 of 4 0.12Down
Ovary1 ± 00 of 4 0.10Down
Testis203 ± 94 of 410.10Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.12Down
Mated spermatheca1 ± 00 of 4 0.07Down
Adult carcass2 ± 00 of 4 0.10Down
Larval CNS3 ± 21 of 4 0.18Down
Larval Salivary gland12 ± 22 of 4 0.63Down
Larval midgut13 ± 22 of 4 0.68Down
Larval tubule79 ± 114 of 4 4.00Up
Larval hindgut22 ± 93 of 4 1.12None
Larval fat body453 ± 334 of 422.50Up
Larval trachea6 ± 41 of 4 0.33Down
Larval carcass19 ± 14 of 4 0.97None
S2 cells (growing)291 ± 44 of 414.50Up
Whole fly20 ± 04 of 4

Looking for FBgn0032693. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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