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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032694 through 18771 annotations produced 1 hits

Misexpression suppressor of ras 3 (MESR3):

Annotation Number : CG15162
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032694
Gbrowse : chr2L:18617256-18661783 (+) // 99.81 //
Probeset : 1627267_at
Accessions : protein= NP_523597;, nucleotide= NM_078873;
FlyMine data for FBgn0032694.
BDGP gene expression has embryonic in situ data for MESR3: 37 pix of staining in 35 body parts.
BioGrid reports that CG15162 interacts with CG9375 .
TRiP has 1 RNAi stocks for FBgn0032694 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032694 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain234 94 of 4 1.00None
Head322 274 of 4 1.40None
Eye168 194 of 4 0.71None
Thoracicoabdominal ganglion261 74 of 4 1.10None
Salivary gland2431 554 of 410.30Up
Crop959 444 of 4 4.10Up
Midgut529 274 of 4 2.20Up
Tubule298 154 of 4 1.30Up
Hindgut1152 374 of 4 4.90Up
Heart137 54 of 4 0.58Down
Fat body110 144 of 4 0.47Down
Ovary197 44 of 4 0.80None
Testis84 44 of 4 0.40Down
Male accessory glands248 44 of 4 1.10None
Virgin spermatheca186 194 of 4 0.79None
Mated spermatheca218 154 of 4 0.93None
Adult carcass226 144 of 4 1.00None
Larval CNS179 294 of 4 0.76None
Larval Salivary gland1909 1224 of 4 8.09Up
Larval midgut359 284 of 4 1.52Up
Larval tubule138 124 of 4 0.60Down
Larval hindgut538 314 of 4 2.28Up
Larval fat body212 244 of 4 0.90None
Larval trachea42 124 of 4 0.18Down
Larval carcass217 464 of 4 0.92None
S2 cells (growing)1115 494 of 4 4.73Up
Whole fly236 244 of 4

Looking for FBgn0032694. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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