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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032700 through 18771 annotations produced 1 hits



(CG10338):

Annotation Number : CG10338
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032700
Gbrowse : chr2L:18695732-18698571 (+) // 100.0 //
Probeset : 1634189_at
Accessions : protein= NP_609897;, nucleotide= NM_136053;
FlyMine data for FBgn0032700.
BDGP gene expression has embryonic in situ data for CG10338: 16 pix of staining in 9 body parts.
VDRC has 3 RNAi stocks for FBgn0032700 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain144 ± 24 of 4 1.40Up
Head107 ± 34 of 4 1.10None
Eye71 ± 24 of 4 0.70Down
Thoracicoabdominal ganglion166 ± 34 of 4 1.60Up
Salivary gland237 ± 24 of 4 2.32Up
Crop117 ± 24 of 4 1.20None
Midgut50 ± 14 of 4 0.50Down
Tubule158 ± 14 of 4 1.50Up
Hindgut84 ± 34 of 4 0.80None
Heart99 ± 14 of 4 0.97None
Fat body167 ± 74 of 4 1.63Up
Ovary200 ± 34 of 4 2.00Up
Testis85 ± 84 of 4 0.80None
Male accessory glands206 ± 54 of 4 2.00Up
Virgin spermatheca155 ± 44 of 4 1.52Up
Mated spermatheca164 ± 24 of 4 1.61Up
Adult carcass87 ± 24 of 4 0.90None
Larval CNS149 ± 14 of 4 1.47Up
Larval Salivary gland188 ± 54 of 4 1.84Up
Larval midgut50 ± 24 of 4 0.49Down
Larval tubule165 ± 24 of 4 1.60Up
Larval hindgut99 ± 34 of 4 0.97None
Larval fat body137 ± 84 of 4 1.30Up
Larval trachea115 ± 74 of 4 1.13None
Larval carcass110 ± 44 of 4 1.08None
S2 cells (growing)104 ± 24 of 4 1.02None
Whole fly102 ± 64 of 4

Looking for FBgn0032700. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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