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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032704 through 18771 annotations produced 1 hits



(CG10373):

Annotation Number : CG10373
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032704
Gbrowse : chr2L:18704569-18705699 (-) // 100.0 //
Probeset : 1637881_at
Accessions : protein= NP_609901;, nucleotide= NM_136057;
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0032704.
BioGrid reports that CG10373 interacts with CG8248 CG9543 CG1391 CG3851 CG4697 CG6707 CG7386 CG9653 .
VDRC has 2 RNAi stocks for FBgn0032704 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain398 ± 54 of 4 1.00None
Head470 ± 114 of 4 1.20None
Eye824 ± 164 of 4 2.04Up
Thoracicoabdominal ganglion440 ± 184 of 4 1.10None
Salivary gland1916 ± 864 of 4 4.75Up
Crop546 ± 184 of 4 1.40Up
Midgut2139 ± 354 of 4 5.30Up
Tubule867 ± 1044 of 4 2.10Up
Hindgut826 ± 314 of 4 2.00Up
Heart586 ± 184 of 4 1.45Up
Fat body478 ± 264 of 4 1.19None
Ovary346 ± 84 of 4 0.90None
Testis148 ± 24 of 4 0.40Down
Male accessory glands1424 ± 364 of 4 3.50Up
Virgin spermatheca375 ± 114 of 4 0.93None
Mated spermatheca420 ± 304 of 4 1.04None
Adult carcass418 ± 264 of 4 1.00None
Larval CNS491 ± 374 of 4 1.22None
Larval Salivary gland2394 ± 1524 of 4 5.93Up
Larval midgut1679 ± 524 of 4 4.16Up
Larval tubule937 ± 184 of 4 2.30Up
Larval hindgut938 ± 184 of 4 2.33Up
Larval fat body722 ± 754 of 4 1.80Up
Larval trachea1135 ± 394 of 4 2.81Up
Larval carcass778 ± 214 of 4 1.93Up
S2 cells (growing)1692 ± 274 of 4 4.19Up
Whole fly403 ± 314 of 4

Looking for FBgn0032704. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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