Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032706 through 18771 annotations produced 1 hits



Inwardly rectifying potassium channel 3 (Irk3):

Annotation Number : CG10369
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032706
Gbrowse : chr2L:18711336-18713535 (-) // 100.0 //
Probeset : 1623066_at
Accessions : protein= NP_001137835; /// NP_609903;, nucleotide= NM_001144363; /// NM_136059;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from sequence
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005242 // inward rectifier potassium channel
FlyMine data for FBgn0032706.
Homophila reports that CG10369 is a close match (4e-33) to human gene KCNJ13;SVD (NP_002233), a gene associated with Snowflake vitreoretinal degeneration, 193230 (3).
TRiP has 1 RNAi stocks for FBgn0032706 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032706 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain328 194 of 4 2.80Up
Head123 84 of 4 1.10None
Eye49 24 of 4 0.43None
Thoracicoabdominal ganglion178 174 of 4 1.50None
Salivary gland8 20 of 4 0.07Down
Crop6 10 of 4 0.10Down
Midgut4 10 of 4 0.00Down
Tubule4932 3634 of 442.60Up
Hindgut48 74 of 4 0.40None
Heart5 11 of 4 0.05Down
Fat body17 111 of 4 0.15Down
Ovary1 00 of 4 0.00Down
Testis0 00 of 4 0.00Down
Male accessory glands11 10 of 4 0.10Down
Virgin spermatheca11 51 of 4 0.10Down
Mated spermatheca7 11 of 4 0.07Down
Adult carcass8 30 of 4 0.10Down
Larval CNS101 134 of 4 0.87None
Larval Salivary gland2 10 of 4 0.02Down
Larval midgut7 20 of 4 0.06Down
Larval tubule2898 1144 of 425.00Up
Larval hindgut4 10 of 4 0.04Down
Larval fat body14 71 of 4 0.10Down
Larval trachea3 20 of 4 0.03Down
Larval carcass11 10 of 4 0.10Down
S2 cells (growing)60 24 of 4 0.52None
Whole fly115 244 of 4

Looking for FBgn0032706. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime