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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032713 through 18771 annotations produced 1 hits


Annotation Number : CG17323
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032713
Gbrowse : chr2L:18824299-18826554 (+) // 98.76 //
Probeset : 1638051_at
Accessions : protein= NP_609910;, nucleotide= NM_136066;
Interpro : "0015020 // glucuronosyltransferase activity // inferred from sequence or structural similarity /// 0015020 // glucurono
FlyMine data for FBgn0032713.
BDGP gene expression has embryonic in situ data for CG17323: 28 pix of staining in 7 body parts.
Homophila reports that CG17323 is a close match (4e-40) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 1 RNAi stocks for FBgn0032713 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain93 44 of 4 0.50Down
Head112 104 of 4 0.60Down
Eye112 44 of 4 0.57Down
Thoracicoabdominal ganglion133 54 of 4 0.70Down
Salivary gland48 33 of 4 0.24Down
Crop253 84 of 4 1.30Up
Midgut40 10 of 4 0.20Down
Tubule12 00 of 4 0.10Down
Hindgut363 144 of 4 1.80Up
Heart547 574 of 4 2.75Up
Fat body414 734 of 4 2.09Up
Ovary33 34 of 4 0.20Down
Testis56 24 of 4 0.30Down
Male accessory glands215 194 of 4 1.10None
Virgin spermatheca71 74 of 4 0.36Down
Mated spermatheca127 184 of 4 0.64Down
Adult carcass673 464 of 4 3.40Up
Larval CNS72 64 of 4 0.36Down
Larval Salivary gland10 20 of 4 0.05Down
Larval midgut29 40 of 4 0.15Down
Larval tubule1373 824 of 4 6.90Up
Larval hindgut55 64 of 4 0.28Down
Larval fat body1187 1004 of 4 6.00Up
Larval trachea37 72 of 4 0.19Down
Larval carcass443 1594 of 4 2.23None
S2 cells (growing)9 10 of 4 0.05Down
Whole fly198 84 of 4

Looking for FBgn0032713. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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