FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032715 through 18771 annotations produced 1 hits

/// sterol carrier protein X-related thiolase (CG17597 /// ScpX):

Annotation Number : CG17597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015808 /// FBgn0032715
Gbrowse : chr2L:18831720-18832999 (+) // 63.13 // /// chr2L:18829005-18831141 (-) // 100.0 //
Probeset : 1628744_s_at
Accessions : protein= NP_524715; /// NP_609912;, nucleotide= NM_079976; /// NM_136068;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from se
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activi
FlyMine data for FBgn0015808 /// FBgn0032715.
Homophila reports that CG17597 is a close match (1e-103) to human gene SCP2 (NP_001007099), a gene associated with Leukoencephalopathy with dystonia and motor neuropathy (3).
BioGrid reports that CG17597 interacts with CG6864 .

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	107 ± 5	4 of 4	0.30	Down
Head	308 ± 13	4 of 4	1.00	None
Eye	172 ± 12	4 of 4	0.55	Down
Thoracicoabdominal ganglion	103 ± 1	4 of 4	0.30	Down
Salivary gland	303 ± 10	4 of 4	0.97	None
Crop	765 ± 10	4 of 4	2.50	Up
Midgut	1497 ± 19	4 of 4	4.80	Up
Tubule	1249 ± 42	4 of 4	4.00	Up
Hindgut	573 ± 5	4 of 4	1.80	Up
Heart	877 ± 37	4 of 4	2.82	Up
Fat body	892 ± 123	4 of 4	2.87	Up
Ovary	178 ± 3	4 of 4	0.60	Down
Testis	73 ± 1	3 of 4	0.20	Down
Male accessory glands	225 ± 5	4 of 4	0.70	Down
Virgin spermatheca	382 ± 22	4 of 4	1.23	None
Mated spermatheca	316 ± 24	4 of 4	1.02	None
Adult carcass	708 ± 15	4 of 4	2.30	Up
Larval CNS	98 ± 17	4 of 4	0.32	Down
Larval Salivary gland	269 ± 20	4 of 4	0.86	None
Larval midgut	1666 ± 68	4 of 4	5.35	Up
Larval tubule	1821 ± 65	4 of 4	5.90	Up
Larval hindgut	322 ± 25	4 of 4	1.04	None
Larval fat body	1485 ± 163	4 of 4	4.80	Up
Larval trachea	300 ± 7	4 of 4	0.96	None
Larval carcass	227 ± 10	4 of 4	0.73	Down
S2 cells (growing)	226 ± 5	4 of 4	0.73	Down
Whole fly	311 ± 19	4 of 4

Looking for FBgn0032715. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720