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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032715 through 18771 annotations produced 1 hits



/// sterol carrier protein X-related thiolase (CG17597 /// ScpX):

Annotation Number : CG17597
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0015808 /// FBgn0032715
Gbrowse : chr2L:18831720-18832999 (+) // 63.13 // /// chr2L:18829005-18831141 (-) // 100.0 //
Probeset : 1628744_s_at
Accessions : protein= NP_524715; /// NP_609912;, nucleotide= NM_079976; /// NM_136068;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from se
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0003988 // acetyl-CoA C-acyltransferase activi
FlyMine data for FBgn0015808 /// FBgn0032715.
Homophila reports that CG17597 is a close match (1e-103) to human gene SCP2 (NP_001007099), a gene associated with Leukoencephalopathy with dystonia and motor neuropathy (3).
BioGrid reports that CG17597 interacts with CG6864 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 54 of 4 0.30Down
Head308 134 of 4 1.00None
Eye172 124 of 4 0.55Down
Thoracicoabdominal ganglion103 14 of 4 0.30Down
Salivary gland303 104 of 4 0.97None
Crop765 104 of 4 2.50Up
Midgut1497 194 of 4 4.80Up
Tubule1249 424 of 4 4.00Up
Hindgut573 54 of 4 1.80Up
Heart877 374 of 4 2.82Up
Fat body892 1234 of 4 2.87Up
Ovary178 34 of 4 0.60Down
Testis73 13 of 4 0.20Down
Male accessory glands225 54 of 4 0.70Down
Virgin spermatheca382 224 of 4 1.23None
Mated spermatheca316 244 of 4 1.02None
Adult carcass708 154 of 4 2.30Up
Larval CNS98 174 of 4 0.32Down
Larval Salivary gland269 204 of 4 0.86None
Larval midgut1666 684 of 4 5.35Up
Larval tubule1821 654 of 4 5.90Up
Larval hindgut322 254 of 4 1.04None
Larval fat body1485 1634 of 4 4.80Up
Larval trachea300 74 of 4 0.96None
Larval carcass227 104 of 4 0.73Down
S2 cells (growing)226 54 of 4 0.73Down
Whole fly311 194 of 4

Looking for FBgn0032715. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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