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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032719 through 18771 annotations produced 1 hits



(CG17321):

Annotation Number : CG17321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032719
Gbrowse : chr2L:18845183-18855110 (+) // 100.0 //
Probeset : 1626537_at
Accessions : protein= NP_609915;, nucleotide= NM_136071;
FlyMine data for FBgn0032719.
BDGP gene expression has embryonic in situ data for CG17321: 23 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0032719 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032719 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain386 174 of 425.20Up
Head103 144 of 4 6.80Up
Eye64 44 of 4 4.20Up
Thoracicoabdominal ganglion252 134 of 416.40Up
Salivary gland7 30 of 4 0.48None
Crop4 00 of 4 0.30Down
Midgut5 10 of 4 0.30Down
Tubule3 00 of 4 0.20Down
Hindgut4 00 of 4 0.30Down
Heart17 14 of 4 1.17None
Fat body52 64 of 4 3.39Up
Ovary1 00 of 4 0.10Down
Testis1 00 of 4 0.10Down
Male accessory glands7 10 of 4 0.50None
Virgin spermatheca54 54 of 4 3.56Up
Mated spermatheca55 34 of 4 3.63Up
Adult carcass16 21 of 4 1.00None
Larval CNS189 254 of 412.33Up
Larval Salivary gland7 12 of 4 0.49None
Larval midgut6 00 of 4 0.43Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut4 00 of 4 0.26Down
Larval fat body18 24 of 4 1.20None
Larval trachea5 31 of 4 0.35Down
Larval carcass5 00 of 4 0.33Down
S2 cells (growing)2 11 of 4 0.16Down
Whole fly15 24 of 4

Looking for FBgn0032719. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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