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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032720 through 18771 annotations produced 2 hits



mitochondrial ribosomal protein L13 (mRpL13):

Annotation Number : CG10603
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032720
Gbrowse : chr2L:18858027-18859190 (-) // 99.19 //
Probeset : 1634232_at
Accessions : protein= NP_523598;, nucleotide= NM_078874;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0032720.
VDRC has 5 RNAi stocks for FBgn0032720 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain373 74 of 4 1.40Up
Head233 84 of 4 0.90None
Eye250 154 of 4 0.92None
Thoracicoabdominal ganglion457 224 of 4 1.70Up
Salivary gland275 174 of 4 1.01None
Crop196 94 of 4 0.70Down
Midgut157 54 of 4 0.60Down
Tubule326 74 of 4 1.20Up
Hindgut342 54 of 4 1.30None
Heart189 64 of 4 0.70Down
Fat body216 334 of 4 0.79None
Ovary435 24 of 4 1.60Up
Testis67 34 of 4 0.20Down
Male accessory glands129 34 of 4 0.50Down
Virgin spermatheca390 264 of 4 1.43Up
Mated spermatheca495 354 of 4 1.81Up
Adult carcass226 154 of 4 0.80None
Larval CNS356 154 of 4 1.31Up
Larval Salivary gland153 114 of 4 0.56Down
Larval midgut126 104 of 4 0.46Down
Larval tubule63 14 of 4 0.20Down
Larval hindgut336 204 of 4 1.23None
Larval fat body56 34 of 4 0.20Down
Larval trachea226 214 of 4 0.83None
Larval carcass164 214 of 4 0.60Down
S2 cells (growing)171 54 of 4 0.63Down
Whole fly272 234 of 4



/// mitochondrial ribosomal protein L13 (CG10602 /// mRpL13):

Annotation Number : CG10602
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032721
Gbrowse : chr2L:18855123-18859212 (-) // 100.0 //
Probeset : 1628237_s_at
Accessions : protein= NP_609916; /// NP_724138; /// NP_724139; /// NP_724140;, nucleotide= NM_136072; /// NM_165267; /// NM_165268; /// NM_165269;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0004177 // aminopeptidase activ
FlyMine data for FBgn0032721.
BDGP gene expression has embryonic in situ data for CG10602: 11 pix of staining in 9 body parts.
BioGrid reports that CG10602 interacts with CG18806 CG31363 CG7196 .
TRiP has 1 RNAi stocks for FBgn0032721 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain188 24 of 4 0.40Down
Head274 194 of 4 0.60Down
Eye325 54 of 4 0.74Down
Thoracicoabdominal ganglion303 14 of 4 0.70Down
Salivary gland362 64 of 4 0.83Down
Crop382 94 of 4 0.90None
Midgut806 214 of 4 1.80Up
Tubule1247 584 of 4 2.80Up
Hindgut519 34 of 4 1.20Up
Heart505 154 of 4 1.15None
Fat body371 324 of 4 0.85None
Ovary577 14 of 4 1.30Up
Testis361 94 of 4 0.80Down
Male accessory glands377 154 of 4 0.90None
Virgin spermatheca444 64 of 4 1.01None
Mated spermatheca497 174 of 4 1.13None
Adult carcass370 84 of 4 0.80Down
Larval CNS504 204 of 4 1.15None
Larval Salivary gland916 604 of 4 2.09Up
Larval midgut783 374 of 4 1.78Up
Larval tubule767 244 of 4 1.70Up
Larval hindgut648 214 of 4 1.48Up
Larval fat body458 254 of 4 1.00None
Larval trachea599 694 of 4 1.37Up
Larval carcass1068 324 of 4 2.43Up
S2 cells (growing)621 84 of 4 1.42Up
Whole fly439 224 of 4

Looking for FBgn0032720. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime