FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032721 through 18771 annotations produced 1 hits

/// mitochondrial ribosomal protein L13 (CG10602 /// mRpL13):

Annotation Number : CG10602
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032721
Gbrowse : chr2L:18855123-18859212 (-) // 100.0 //
Probeset : 1628237_s_at
Accessions : protein= NP_609916; /// NP_724138; /// NP_724139; /// NP_724140;, nucleotide= NM_136072; /// NM_165267; /// NM_165268; /// NM_165269;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0004177 // aminopeptidase activ
FlyMine data for FBgn0032721.
BDGP gene expression has embryonic in situ data for CG10602: 11 pix of staining in 9 body parts.
BioGrid reports that CG10602 interacts with CG18806 CG31363 CG7196 .
TRiP has 1 RNAi stocks for FBgn0032721 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032721 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	188 ± 2	4 of 4	0.40	Down
Head	274 ± 19	4 of 4	0.60	Down
Eye	325 ± 5	4 of 4	0.74	Down
Thoracicoabdominal ganglion	303 ± 1	4 of 4	0.70	Down
Salivary gland	362 ± 6	4 of 4	0.83	Down
Crop	382 ± 9	4 of 4	0.90	None
Midgut	806 ± 21	4 of 4	1.80	Up
Tubule	1247 ± 58	4 of 4	2.80	Up
Hindgut	519 ± 3	4 of 4	1.20	Up
Heart	505 ± 15	4 of 4	1.15	None
Fat body	371 ± 32	4 of 4	0.85	None
Ovary	577 ± 1	4 of 4	1.30	Up
Testis	361 ± 9	4 of 4	0.80	Down
Male accessory glands	377 ± 15	4 of 4	0.90	None
Virgin spermatheca	444 ± 6	4 of 4	1.01	None
Mated spermatheca	497 ± 17	4 of 4	1.13	None
Adult carcass	370 ± 8	4 of 4	0.80	Down
Larval CNS	504 ± 20	4 of 4	1.15	None
Larval Salivary gland	916 ± 60	4 of 4	2.09	Up
Larval midgut	783 ± 37	4 of 4	1.78	Up
Larval tubule	767 ± 24	4 of 4	1.70	Up
Larval hindgut	648 ± 21	4 of 4	1.48	Up
Larval fat body	458 ± 25	4 of 4	1.00	None
Larval trachea	599 ± 69	4 of 4	1.37	Up
Larval carcass	1068 ± 32	4 of 4	2.43	Up
S2 cells (growing)	621 ± 8	4 of 4	1.42	Up
Whole fly	439 ± 22	4 of 4

Looking for FBgn0032721. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720