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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032724 through 18771 annotations produced 1 hits


Annotation Number : CG10428
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032724
Gbrowse : chr2L:18948896-18950978 (+) // 100.0 //
Probeset : 1629319_at
Accessions : protein= NP_609918;, nucleotide= NM_136074;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation
FlyMine data for FBgn0032724.
BDGP gene expression has embryonic in situ data for CG10428: 12 pix of staining in 7 body parts.
VDRC has 1 RNAi stocks for FBgn0032724 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain187 54 of 4 1.40Up
Head106 24 of 4 0.80Down
Eye176 54 of 4 1.34Up
Thoracicoabdominal ganglion227 74 of 4 1.70Up
Salivary gland79 24 of 4 0.61Down
Crop106 34 of 4 0.80Down
Midgut63 24 of 4 0.50Down
Tubule64 64 of 4 0.50Down
Hindgut64 14 of 4 0.50Down
Heart62 24 of 4 0.47Down
Fat body107 84 of 4 0.81Down
Ovary219 94 of 4 1.70Up
Testis78 44 of 4 0.60Down
Male accessory glands79 64 of 4 0.60Down
Virgin spermatheca142 34 of 4 1.08None
Mated spermatheca137 104 of 4 1.04None
Adult carcass95 54 of 4 0.70Down
Larval CNS201 104 of 4 1.53Up
Larval Salivary gland84 24 of 4 0.64Down
Larval midgut73 44 of 4 0.55Down
Larval tubule100 74 of 4 0.80Down
Larval hindgut103 24 of 4 0.78Down
Larval fat body107 44 of 4 0.80Down
Larval trachea86 34 of 4 0.65Down
Larval carcass123 64 of 4 0.93None
S2 cells (growing)163 34 of 4 1.24Up
Whole fly131 74 of 4

Looking for FBgn0032724. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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