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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032725 through 18771 annotations produced 1 hits



Nedd8 (Nedd8):

Annotation Number : CG10679
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032725
Gbrowse : chr2L:18951240-18951715 (-) // 100.0 //
Probeset : 1624883_at
Accessions : protein= NP_609919;, nucleotide= NM_136075;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural
Interpro : 0031386 // protein tag // non-traceable author statement
FlyMine data for FBgn0032725.
BioGrid reports that CG10679 interacts with CG8493 CG15576 CG33130 CG6576 .
TRiP has 1 RNAi stocks for FBgn0032725 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032725 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain240 ± 44 of 4 0.60Down
Head329 ± 154 of 4 0.80Down
Eye443 ± 114 of 4 1.07None
Thoracicoabdominal ganglion305 ± 104 of 4 0.70Down
Salivary gland406 ± 54 of 4 0.98None
Crop496 ± 144 of 4 1.20Up
Midgut276 ± 44 of 4 0.70Down
Tubule280 ± 34 of 4 0.70Down
Hindgut385 ± 144 of 4 0.90None
Heart521 ± 124 of 4 1.25Up
Fat body472 ± 164 of 4 1.13Up
Ovary641 ± 134 of 4 1.50Up
Testis338 ± 94 of 4 0.80Down
Male accessory glands380 ± 104 of 4 0.90Down
Virgin spermatheca343 ± 44 of 4 0.83Down
Mated spermatheca409 ± 204 of 4 0.98None
Adult carcass347 ± 54 of 4 0.80Down
Larval CNS762 ± 544 of 4 1.83Up
Larval Salivary gland574 ± 164 of 4 1.38Up
Larval midgut283 ± 114 of 4 0.68Down
Larval tubule578 ± 114 of 4 1.40Up
Larval hindgut555 ± 344 of 4 1.34Up
Larval fat body549 ± 424 of 4 1.30None
Larval trachea611 ± 544 of 4 1.47Up
Larval carcass641 ± 274 of 4 1.54Up
S2 cells (growing)535 ± 194 of 4 1.29Up
Whole fly416 ± 44 of 4

Looking for FBgn0032725. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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