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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032727 through 18771 annotations produced 1 hits



selenocysteine methyltransferase (CG10623):

Annotation Number : CG10623
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032727
Gbrowse : chr2L:18955480-18957163 (-) // 100.0 //
Probeset : 1637826_at
Accessions : protein= NP_609921;, nucleotide= NM_136077;
Interpro : 0008168 // methyltransferase activity // inferred from electronic annotation /// 0008898 // homocysteine S-methyltransfe
FlyMine data for FBgn0032727.
BDGP gene expression has embryonic in situ data for CG10623: 17 pix of staining in 2 body parts.
BioGrid reports that CG10623 interacts with CG17230 .
VDRC has 3 RNAi stocks for FBgn0032727 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain95 14 of 4 0.40Down
Head131 94 of 4 0.50Down
Eye247 64 of 4 1.02None
Thoracicoabdominal ganglion97 54 of 4 0.40Down
Salivary gland599 244 of 4 2.46Up
Crop283 134 of 4 1.20None
Midgut499 234 of 4 2.10Up
Tubule1958 1674 of 4 8.10Up
Hindgut291 124 of 4 1.20Up
Heart167 94 of 4 0.69Down
Fat body86 114 of 4 0.35Down
Ovary284 154 of 4 1.20None
Testis360 104 of 4 1.50Up
Male accessory glands461 204 of 4 1.90Up
Virgin spermatheca614 254 of 4 2.53Up
Mated spermatheca615 544 of 4 2.53Up
Adult carcass130 164 of 4 0.50Down
Larval CNS40 54 of 4 0.17Down
Larval Salivary gland559 424 of 4 2.30Up
Larval midgut765 1084 of 4 3.15Up
Larval tubule1413 654 of 4 5.80Up
Larval hindgut243 264 of 4 1.00None
Larval fat body140 24 of 4 0.60Down
Larval trachea111 164 of 4 0.46Down
Larval carcass680 1194 of 4 2.80Up
S2 cells (growing)63 14 of 4 0.26Down
Whole fly243 134 of 4

Looking for FBgn0032727. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime