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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032741 through 18771 annotations produced 1 hits



similar to Deadpan (Side):

Annotation Number : CG10446
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032741
Gbrowse : chr2L:19027711-19030780 (+) // 99.68 //
Probeset : 1638078_at
Accessions : protein= NP_523599;, nucleotide= NM_078875;
Pathway : DNA-dependent // inferred from electronic annotation /// 0045449 // regulation of transcription // inferred from sequen
Interpro : 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from electronic annotation
FlyMine data for FBgn0032741.
BDGP gene expression has embryonic in situ data for Side: 28 pix of staining in 6 body parts.
VDRC has 3 RNAi stocks for FBgn0032741 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain120 14 of 4 5.30Up
Head218 174 of 4 9.60Up
Eye886 144 of 439.06Up
Thoracicoabdominal ganglion149 44 of 4 6.60Up
Salivary gland1 00 of 4 0.08Down
Crop2 10 of 4 0.10Down
Midgut4 10 of 4 0.20Down
Tubule2 00 of 4 0.10Down
Hindgut1 10 of 4 0.10Down
Heart2 10 of 4 0.11Down
Fat body2 10 of 4 0.12Down
Ovary1 00 of 4 0.10Down
Testis158 24 of 4 7.00Up
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca2 10 of 4 0.09Down
Mated spermatheca3 00 of 4 0.13Down
Adult carcass11 30 of 4 0.50None
Larval CNS485 524 of 421.39Up
Larval Salivary gland1 00 of 4 0.08Down
Larval midgut1 00 of 4 0.06Down
Larval tubule1 00 of 4 0.10Down
Larval hindgut3 10 of 4 0.17Down
Larval fat body19 61 of 4 0.90None
Larval trachea14 202 of 4 0.65None
Larval carcass6 11 of 4 0.30Down
S2 cells (growing)1 00 of 4 0.06Down
Whole fly22 34 of 4

Looking for FBgn0032741. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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