FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032748 through 18771 annotations produced 1 hits

transcription unit 37B1 (CG10492):

Annotation Number : CG10492
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032748
Gbrowse : chr2L:19054080-19058823 (+) // 100.0 //
Probeset : 1628001_at
Accessions : protein= NP_001097179; /// NP_609937;, nucleotide= NM_001103709; /// NM_136093;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0032748.
VDRC has 1 RNAi stocks for FBgn0032748 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	295 ± 8	4 of 4	1.50	Up
Head	127 ± 7	4 of 4	0.60	Down
Eye	140 ± 7	4 of 4	0.71	Down
Thoracicoabdominal ganglion	227 ± 9	4 of 4	1.20	None
Salivary gland	144 ± 14	4 of 4	0.73	Down
Crop	150 ± 11	4 of 4	0.80	Down
Midgut	83 ± 6	4 of 4	0.40	Down
Tubule	112 ± 1	4 of 4	0.60	Down
Hindgut	111 ± 2	4 of 4	0.60	Down
Heart	101 ± 6	4 of 4	0.51	Down
Fat body	124 ± 7	4 of 4	0.63	Down
Ovary	598 ± 8	4 of 4	3.00	Up
Testis	23 ± 1	4 of 4	0.10	Down
Male accessory glands	148 ± 10	4 of 4	0.70	Down
Virgin spermatheca	209 ± 4	4 of 4	1.06	None
Mated spermatheca	202 ± 4	4 of 4	1.03	None
Adult carcass	100 ± 5	4 of 4	0.50	Down
Larval CNS	280 ± 24	4 of 4	1.42	Up
Larval Salivary gland	219 ± 4	4 of 4	1.11	None
Larval midgut	85 ± 2	4 of 4	0.43	Down
Larval tubule	98 ± 2	4 of 4	0.50	Down
Larval hindgut	108 ± 1	4 of 4	0.55	Down
Larval fat body	74 ± 1	4 of 4	0.40	Down
Larval trachea	205 ± 22	4 of 4	1.04	None
Larval carcass	123 ± 7	4 of 4	0.62	Down
S2 cells (growing)	162 ± 4	4 of 4	0.82	None
Whole fly	197 ± 12	4 of 4

Looking for FBgn0032748. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720