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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032748 through 18771 annotations produced 1 hits



transcription unit 37B1 (CG10492):

Annotation Number : CG10492
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032748
Gbrowse : chr2L:19054080-19058823 (+) // 100.0 //
Probeset : 1628001_at
Accessions : protein= NP_001097179; /// NP_609937;, nucleotide= NM_001103709; /// NM_136093;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0032748.
VDRC has 1 RNAi stocks for FBgn0032748 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain295 84 of 4 1.50Up
Head127 74 of 4 0.60Down
Eye140 74 of 4 0.71Down
Thoracicoabdominal ganglion227 94 of 4 1.20None
Salivary gland144 144 of 4 0.73Down
Crop150 114 of 4 0.80Down
Midgut83 64 of 4 0.40Down
Tubule112 14 of 4 0.60Down
Hindgut111 24 of 4 0.60Down
Heart101 64 of 4 0.51Down
Fat body124 74 of 4 0.63Down
Ovary598 84 of 4 3.00Up
Testis23 14 of 4 0.10Down
Male accessory glands148 104 of 4 0.70Down
Virgin spermatheca209 44 of 4 1.06None
Mated spermatheca202 44 of 4 1.03None
Adult carcass100 54 of 4 0.50Down
Larval CNS280 244 of 4 1.42Up
Larval Salivary gland219 44 of 4 1.11None
Larval midgut85 24 of 4 0.43Down
Larval tubule98 24 of 4 0.50Down
Larval hindgut108 14 of 4 0.55Down
Larval fat body74 14 of 4 0.40Down
Larval trachea205 224 of 4 1.04None
Larval carcass123 74 of 4 0.62Down
S2 cells (growing)162 44 of 4 0.82None
Whole fly197 124 of 4

Looking for FBgn0032748. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime