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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032755 through 18771 annotations produced 1 hits



(CG17344):

Annotation Number : CG17344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032755
Gbrowse : chr2L:19102043-19102909 (+) // 100.0 //
Probeset : 1637440_at
Accessions : protein= NP_609943;, nucleotide= NM_136099;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032755.
BDGP gene expression has embryonic in situ data for CG17344: 4 pix of staining in 1 body parts.
BioGrid reports that CG17344 interacts with CG9650 .
VDRC has 2 RNAi stocks for FBgn0032755 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head5 ± 01 of 4 0.00Down
Eye4 ± 12 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 11 of 4 0.00Down
Salivary gland11 ± 22 of 4 0.05Down
Crop3 ± 10 of 4 0.00Down
Midgut9 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.00Down
Hindgut4 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.01Down
Fat body4 ± 11 of 4 0.02Down
Ovary1 ± 00 of 4 0.00Down
Testis2303 ± 764 of 4 8.90Up
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.02Down
Mated spermatheca5 ± 11 of 4 0.02Down
Adult carcass12 ± 62 of 4 0.00Down
Larval CNS4 ± 22 of 4 0.02Down
Larval Salivary gland4 ± 00 of 4 0.02Down
Larval midgut12 ± 02 of 4 0.05Down
Larval tubule3 ± 00 of 4 0.00Down
Larval hindgut3 ± 11 of 4 0.01Down
Larval fat body160 ± 824 of 4 0.60None
Larval trachea11 ± 152 of 4 0.04Down
Larval carcass6 ± 01 of 4 0.02Down
S2 cells (growing)4 ± 00 of 4 0.02Down
Whole fly258 ± 154 of 4

Looking for FBgn0032755. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime