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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032768 through 18771 annotations produced 1 hits


(CG17564):

Annotation Number : CG17564
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032768
Gbrowse : chr2L:19298334-19299851 (-) // 100.0 //
Probeset : 1637094_at
Accessions : protein= NP_609954;, nucleotide= NM_136110;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032768.
BioGrid reports that CG17564 interacts with CG17744 CG5081 CG5121 CG6856 CG8383 CG17991 CG4394 CG9749 .
VDRC has 3 RNAi stocks for FBgn0032768 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head4 ± 00 of 4 0.10Down
Eye5 ± 20 of 4 0.07Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland7 ± 20 of 4 0.09Down
Crop7 ± 20 of 4 0.10Down
Midgut8 ± 10 of 4 0.10Down
Tubule5 ± 10 of 4 0.10Down
Hindgut10 ± 12 of 4 0.10Down
Heart2 ± 00 of 4 0.03Down
Fat body6 ± 50 of 4 0.08Down
Ovary1 ± 00 of 4 0.00Down
Testis909 ± 164 of 411.90Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.03Down
Mated spermatheca4 ± 20 of 4 0.06Down
Adult carcass10 ± 40 of 4 0.10Down
Larval CNS4 ± 31 of 4 0.06Down
Larval Salivary gland3 ± 00 of 4 0.04Down
Larval midgut9 ± 12 of 4 0.12Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut6 ± 11 of 4 0.08Down
Larval fat body122 ± 644 of 4 1.60None
Larval trachea9 ± 121 of 4 0.13Down
Larval carcass4 ± 10 of 4 0.06Down
S2 cells (growing)6 ± 00 of 4 0.08Down
Whole fly76 ± 34 of 4

Looking for FBgn0032768. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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