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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032772 through 18771 annotations produced 1 hits



(CG17350):

Annotation Number : CG17350
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032772
Gbrowse : chr2L:19380929-19383272 (+) // 100.0 //
Probeset : 1628644_at
Accessions : protein= NP_609958;, nucleotide= NM_136114;
FlyMine data for FBgn0032772.
VDRC has 2 RNAi stocks for FBgn0032772 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.30Down
Head34 ± 34 of 4 3.70Up
Eye10 ± 12 of 4 1.10None
Thoracicoabdominal ganglion7 ± 10 of 4 0.80None
Salivary gland2 ± 00 of 4 0.30Down
Crop7 ± 11 of 4 0.80None
Midgut1 ± 00 of 4 0.10Down
Tubule4 ± 10 of 4 0.50Down
Hindgut4 ± 10 of 4 0.50Down
Heart1 ± 00 of 4 0.19Down
Fat body1 ± 00 of 4 0.16Down
Ovary0 ± 00 of 4 0.10Down
Testis82 ± 24 of 4 8.70Up
Male accessory glands6 ± 20 of 4 0.60None
Virgin spermatheca1 ± 00 of 4 0.11Down
Mated spermatheca3 ± 10 of 4 0.31Down
Adult carcass25 ± 24 of 4 2.70Up
Larval CNS3 ± 00 of 4 0.41Down
Larval Salivary gland6 ± 20 of 4 0.68None
Larval midgut3 ± 10 of 4 0.33Down
Larval tubule2 ± 00 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.13Down
Larval fat body3 ± 00 of 4 0.40Down
Larval trachea16 ± 33 of 4 1.77Up
Larval carcass16 ± 23 of 4 1.72None
S2 cells (growing)5 ± 10 of 4 0.59Down
Whole fly9 ± 11 of 4

Looking for FBgn0032772. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime