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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032774 through 18771 annotations produced 1 hits



(CG17549):

Annotation Number : CG17549
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032774
Gbrowse : chr2L:19387049-19390070 (-) // 100.0 //
Probeset : 1634507_s_at
Accessions : protein= NP_001163014; /// NP_609960; /// NP_724178; /// NP_724179;, nucleotide= NM_001169543; /// NM_136116; /// NM_165288; /// NM_165289;
FlyMine data for FBgn0032774.
BDGP gene expression has embryonic in situ data for CG17549: 57 pix of staining in 9 body parts.
BioGrid reports that CG17549 interacts with CG5466 CG5674 .
VDRC has 3 RNAi stocks for FBgn0032774 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 54 of 4 0.20Down
Head2752 1444 of 4 6.00Up
Eye2089 924 of 4 4.58Up
Thoracicoabdominal ganglion51 104 of 4 0.10Down
Salivary gland123 94 of 4 0.27Down
Crop3001 954 of 4 6.60Up
Midgut278 274 of 4 0.60Down
Tubule87 74 of 4 0.20Down
Hindgut1225 334 of 4 2.70Up
Heart1581 1764 of 4 3.47Up
Fat body2399 984 of 4 5.26Up
Ovary10 02 of 4 0.00Down
Testis366 134 of 4 0.80Down
Male accessory glands444 404 of 4 1.00None
Virgin spermatheca2964 784 of 4 6.50Up
Mated spermatheca2051 824 of 4 4.50Up
Adult carcass1848 414 of 4 4.10Up
Larval CNS61 154 of 4 0.14Down
Larval Salivary gland105 104 of 4 0.23Down
Larval midgut124 104 of 4 0.27Down
Larval tubule23 14 of 4 0.10Down
Larval hindgut1213 524 of 4 2.66Up
Larval fat body399 714 of 4 0.90None
Larval trachea3384 4654 of 4 7.43Up
Larval carcass3142 2274 of 4 6.89Up
S2 cells (growing)40 44 of 4 0.09Down
Whole fly455 214 of 4

Looking for FBgn0032774. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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