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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032775 through 18771 annotations produced 1 hits



(CG17544):

Annotation Number : CG17544
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032775
Gbrowse : chr2L:19390365-19398491 (-) // 100.0 //
Probeset : 1623069_s_at
Accessions : protein= NP_001163015; /// NP_609961; /// NP_724180; /// NP_724181;, nucleotide= NM_001169544; /// NM_136117; /// NM_165290; /// NM_165291;
Pathway : 0005777 // peroxisome // inferred from electronic annotation
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0003997 // acyl-CoA oxidase activ
FlyMine data for FBgn0032775.
Homophila reports that CG17544 is a close match (1e-12) to human gene ACAD9 (NP_054768), a gene associated with ACAD9 deficiency, 611126 (3).
BioGrid reports that CG17544 interacts with CG31764 CG5359 .
VDRC has 3 RNAi stocks for FBgn0032775 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain234 ± 84 of 4 1.40None
Head140 ± 114 of 4 0.80None
Eye195 ± 74 of 4 1.15None
Thoracicoabdominal ganglion224 ± 34 of 4 1.30None
Salivary gland62 ± 44 of 4 0.37Down
Crop37 ± 34 of 4 0.20Down
Midgut1104 ± 644 of 4 6.50Up
Tubule322 ± 164 of 4 1.90Up
Hindgut473 ± 144 of 4 2.80Up
Heart52 ± 64 of 4 0.31Down
Fat body23 ± 44 of 4 0.14Down
Ovary97 ± 84 of 4 0.60Down
Testis63 ± 64 of 4 0.40Down
Male accessory glands64 ± 34 of 4 0.40Down
Virgin spermatheca52 ± 34 of 4 0.31Down
Mated spermatheca58 ± 34 of 4 0.34Down
Adult carcass47 ± 24 of 4 0.30Down
Larval CNS172 ± 234 of 4 1.01None
Larval Salivary gland231 ± 74 of 4 1.36None
Larval midgut99 ± 74 of 4 0.58None
Larval tubule55 ± 54 of 4 0.30Down
Larval hindgut158 ± 214 of 4 0.93None
Larval fat body27 ± 22 of 4 0.20Down
Larval trachea274 ± 144 of 4 1.61Up
Larval carcass96 ± 54 of 4 0.56Down
S2 cells (growing)552 ± 84 of 4 3.25Up
Whole fly170 ± 234 of 4

Looking for FBgn0032775. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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