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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032779 through 18771 annotations produced 1 hits



(CG16771):

Annotation Number : CG16771
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032779
Gbrowse : chr2L:19427224-19429038 (+) // 100.0 //
Probeset : 1630977_at
Accessions : protein= NP_609963;, nucleotide= NM_136119;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004035 // alkaline phosphatase activity // inf
FlyMine data for FBgn0032779.
Homophila reports that CG16771 is a close match (8e-78) to human gene (NP_001623), a gene associated with .
VDRC has 1 RNAi stocks for FBgn0032779 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain41 14 of 4 1.00None
Head42 14 of 4 1.10None
Eye26 33 of 4 0.65Down
Thoracicoabdominal ganglion74 44 of 4 1.90Up
Salivary gland23 41 of 4 0.58Down
Crop47 44 of 4 1.20None
Midgut148 64 of 4 3.70Up
Tubule409 304 of 410.20Up
Hindgut98 44 of 4 2.50Up
Heart98 44 of 4 2.47Up
Fat body104 34 of 4 2.60Up
Ovary15 13 of 4 0.40Down
Testis6 00 of 4 0.20Down
Male accessory glands10 30 of 4 0.30Down
Virgin spermatheca80 54 of 4 2.01Up
Mated spermatheca69 114 of 4 1.74None
Adult carcass75 34 of 4 1.90Up
Larval CNS15 23 of 4 0.38Down
Larval Salivary gland23 13 of 4 0.58Down
Larval midgut367 234 of 4 9.18Up
Larval tubule308 64 of 4 7.70Up
Larval hindgut82 24 of 4 2.07Up
Larval fat body38 33 of 4 1.00None
Larval trachea13 14 of 4 0.34Down
Larval carcass52 54 of 4 1.31None
S2 cells (growing)221 84 of 4 5.54Up
Whole fly40 34 of 4

Looking for FBgn0032779. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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