Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032780 through 18771 annotations produced 1 hits



(CG13085):

Annotation Number : CG13085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032780
Gbrowse : chr2L:19426321-19430270 (+) // 100.0 //
Probeset : 1631382_at
Accessions : protein= NP_609964;, nucleotide= NM_136120;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032780.
BioGrid reports that CG13085 interacts with CG13701 CG16983 CG14053 CG1780 CG2185 CG30430 CG6856 CG9070 .
VDRC has 3 RNAi stocks for FBgn0032780 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 14 of 4 0.60Down
Head38 ± 24 of 4 1.90Up
Eye12 ± 24 of 4 0.65None
Thoracicoabdominal ganglion15 ± 02 of 4 0.80None
Salivary gland16 ± 60 of 4 0.84None
Crop17 ± 24 of 4 0.90None
Midgut77 ± 24 of 4 4.00Up
Tubule68 ± 54 of 4 3.50Up
Hindgut35 ± 14 of 4 1.80Up
Heart42 ± 24 of 4 2.18Up
Fat body84 ± 74 of 4 4.31Up
Ovary8 ± 04 of 4 0.40Down
Testis6 ± 01 of 4 0.30Down
Male accessory glands5 ± 10 of 4 0.30Down
Virgin spermatheca61 ± 64 of 4 3.15Up
Mated spermatheca73 ± 74 of 4 3.74Up
Adult carcass50 ± 14 of 4 2.60Up
Larval CNS10 ± 24 of 4 0.56Down
Larval Salivary gland9 ± 20 of 4 0.48Down
Larval midgut38 ± 24 of 4 1.98Up
Larval tubule167 ± 84 of 4 8.60Up
Larval hindgut16 ± 14 of 4 0.83None
Larval fat body79 ± 144 of 4 4.00Up
Larval trachea3 ± 00 of 4 0.20Down
Larval carcass64 ± 44 of 4 3.27Up
S2 cells (growing)13 ± 14 of 4 0.68Down
Whole fly19 ± 14 of 4

Looking for FBgn0032780. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime