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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032783 through 18771 annotations produced 1 hits



(CG10237):

Annotation Number : CG10237
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032783
Gbrowse : chr2L:19435843-19441278 (-) // 100.0 //
Probeset : 1627106_a_at
Accessions : protein= NP_609967; /// NP_724192; /// NP_724193;, nucleotide= NM_136123; /// NM_165298; /// NM_165299;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008431 // vitamin E binding // inferred from
FlyMine data for FBgn0032783.
BDGP gene expression has embryonic in situ data for CG10237: 4 pix of staining in 1 body parts.
Homophila reports that CG10237 is a close match (8e-28) to human gene RLBP1 (NP_000317), a gene associated with Bothnia retinal dystrophy, 607475 (3);Fundus albipunctatus, 136880 (3);Newfoundland rod-cone dystrophy, 607476 (3);Retinitis pigmentosa, AR, 268000 (3);Retinitis punctata albescens, 136880 (3).
BioGrid reports that CG10237 interacts with CG4840 CG9796 .
VDRC has 1 RNAi stocks for FBgn0032783 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain40 34 of 4 0.10Down
Head1346 1064 of 4 1.80Up
Eye612 534 of 4 0.80None
Thoracicoabdominal ganglion67 34 of 4 0.10Down
Salivary gland91 134 of 4 0.12Down
Crop793 154 of 4 1.00None
Midgut206 114 of 4 0.30Down
Tubule37 93 of 4 0.00Down
Hindgut1491 284 of 4 1.90Up
Heart1136 644 of 4 1.48Up
Fat body909 824 of 4 1.19Up
Ovary1021 104 of 4 1.30Up
Testis15 24 of 4 0.00Down
Male accessory glands383 244 of 4 0.50Down
Virgin spermatheca197 154 of 4 0.26Down
Mated spermatheca152 184 of 4 0.20Down
Adult carcass1717 394 of 4 2.20Up
Larval CNS28 24 of 4 0.04Down
Larval Salivary gland76 194 of 4 0.10Down
Larval midgut15 12 of 4 0.02Down
Larval tubule12 23 of 4 0.00Down
Larval hindgut25 14 of 4 0.03Down
Larval fat body20 14 of 4 0.00Down
Larval trachea100 134 of 4 0.13Down
Larval carcass572 534 of 4 0.75Down
S2 cells (growing)9 01 of 4 0.01Down
Whole fly767 334 of 4

Looking for FBgn0032783. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime