FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032785 through 18771 annotations produced 1 hits

(CG10026):

Annotation Number : CG10026
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032785
Gbrowse : chr2L:19455677-19457724 (+) // 100.0 //
Probeset : 1624468_a_at
Accessions : protein= NP_609968; /// NP_724195; /// NP_724196;, nucleotide= NM_136124; /// NM_165301; /// NM_165302;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0008431 // vitamin E binding // inferred from
FlyMine data for FBgn0032785.
BDGP gene expression has embryonic in situ data for CG10026: 20 pix of staining in 3 body parts.
Homophila reports that CG10026 is a close match (1e-24) to human gene AVED;TTP1;TTPA (NP_000361), a gene associated with Ataxia with isolated vitamin E deficiency, 277460 (3).
VDRC has 2 RNAi stocks for FBgn0032785 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	2 of 4	0.10	Down
Head	263 ± 15	4 of 4	3.20	Up
Eye	50 ± 3	4 of 4	0.62	Down
Thoracicoabdominal ganglion	10 ± 1	1 of 4	0.10	Down
Salivary gland	302 ± 10	4 of 4	3.73	Up
Crop	152 ± 11	4 of 4	1.90	Up
Midgut	69 ± 5	4 of 4	0.90	None
Tubule	28 ± 3	4 of 4	0.30	Down
Hindgut	1235 ± 52	4 of 4	15.20	Up
Heart	241 ± 20	4 of 4	2.98	Up
Fat body	27 ± 1	4 of 4	0.34	Down
Ovary	3 ± 0	0 of 4	0.00	Down
Testis	82 ± 4	4 of 4	1.00	None
Male accessory glands	106 ± 14	4 of 4	1.30	None
Virgin spermatheca	42 ± 6	4 of 4	0.53	Down
Mated spermatheca	51 ± 5	4 of 4	0.64	Down
Adult carcass	108 ± 8	4 of 4	1.30	Up
Larval CNS	3 ± 1	0 of 4	0.04	Down
Larval Salivary gland	32 ± 2	4 of 4	0.40	Down
Larval midgut	10 ± 0	3 of 4	0.13	Down
Larval tubule	7 ± 1	2 of 4	0.10	Down
Larval hindgut	70 ± 13	4 of 4	0.87	None
Larval fat body	1842 ± 222	4 of 4	22.70	Up
Larval trachea	58 ± 16	4 of 4	0.73	None
Larval carcass	603 ± 41	4 of 4	7.45	Up
S2 cells (growing)	275 ± 7	4 of 4	3.41	Up
Whole fly	81 ± 0	4 of 4

Looking for FBgn0032785. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720