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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032787 through 18771 annotations produced 1 hits



(CG10195):

Annotation Number : CG10195
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032787
Gbrowse : chr2L:19482871-19484702 (-) // 99.73 //
Probeset : 1633830_at
Accessions : protein= NP_609970;, nucleotide= NM_136126;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0016787 // hydrolase activity // inferred from elec
FlyMine data for FBgn0032787.
BioGrid reports that CG10195 interacts with CG7025 CG17107 .
VDRC has 3 RNAi stocks for FBgn0032787 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain30 ± 14 of 4 0.30Down
Head66 ± 04 of 4 0.80Down
Eye73 ± 34 of 4 0.83Down
Thoracicoabdominal ganglion44 ± 34 of 4 0.50Down
Salivary gland125 ± 54 of 4 1.42Up
Crop175 ± 34 of 4 2.00Up
Midgut222 ± 84 of 4 2.50Up
Tubule190 ± 84 of 4 2.20Up
Hindgut148 ± 44 of 4 1.70Up
Heart205 ± 134 of 4 2.32Up
Fat body190 ± 44 of 4 2.15Up
Ovary88 ± 24 of 4 1.00None
Testis13 ± 14 of 4 0.20Down
Male accessory glands340 ± 274 of 4 3.80Up
Virgin spermatheca119 ± 34 of 4 1.36Up
Mated spermatheca106 ± 64 of 4 1.21Up
Adult carcass166 ± 24 of 4 1.90Up
Larval CNS54 ± 34 of 4 0.62Down
Larval Salivary gland74 ± 44 of 4 0.84Down
Larval midgut280 ± 204 of 4 3.17Up
Larval tubule300 ± 174 of 4 3.40Up
Larval hindgut80 ± 34 of 4 0.91None
Larval fat body205 ± 134 of 4 2.30Up
Larval trachea108 ± 44 of 4 1.23Up
Larval carcass59 ± 34 of 4 0.67Down
S2 cells (growing)107 ± 14 of 4 1.21Up
Whole fly88 ± 34 of 4

Looking for FBgn0032787. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime