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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032788 through 18771 annotations produced 1 hits


Annotation Number : CG13084
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032788
Gbrowse : chr2L:19484972-19486396 (+) // 100.0 //
Probeset : 1637395_at
Accessions : protein= NP_609971;, nucleotide= NM_136127;
Pathway : 0042600 // chorion // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032788.
BioGrid reports that CG13084 interacts with CG1968 CG31534 CG13458 CG32486 CG3929 CG4303 CG4755 CG5005 CG5466 CG8580 CG8977 CG9083 CG9124 CG9201 CG31094 .
VDRC has 2 RNAi stocks for FBgn0032788 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye1 10 of 4 0.01Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland3 00 of 4 0.02Down
Crop1 00 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut1 00 of 4 0.00Down
Heart0 00 of 4 0.00Down
Fat body1 00 of 4 0.01Down
Ovary390 444 of 4 2.20Up
Testis1 00 of 4 0.00Down
Male accessory glands57 94 of 4 0.30None
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass2 00 of 4 0.00Down
Larval CNS1 00 of 4 0.01Down
Larval Salivary gland2 00 of 4 0.01Down
Larval midgut1 00 of 4 0.01Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut0 00 of 4 0.00Down
Larval fat body1 00 of 4 0.00Down
Larval trachea0 00 of 4 0.00Down
Larval carcass2 00 of 4 0.01Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly176 424 of 4

Looking for FBgn0032788. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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