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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032789 through 18771 annotations produced 1 hits



(CG13083):

Annotation Number : CG13083
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032789
Gbrowse : chr2L:19487523-19488531 (+) // 100.0 //
Probeset : 1641113_at
Accessions : protein= NP_609972; /// NP_995727;, nucleotide= NM_136128; /// NM_206005;
Pathway : 0042600 // chorion // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032789.
BioGrid reports that CG13083 interacts with CG13434 CG1378 CG13949 CG17599 CG17785 CG31029 CG6664 CG13502 CG14410 CG1474 CG14750 CG15764 CG16969 CG17744 CG18292 CG30404 CG4586 CG5327 CG5913 CG6251 CG7761 CG8368 CG8383 CG8725 .
VDRC has 3 RNAi stocks for FBgn0032789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head3 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland18 ± 11 of 4 0.04Down
Crop4 ± 10 of 4 0.00Down
Midgut4 ± 20 of 4 0.00Down
Tubule2 ± 00 of 4 0.00Down
Hindgut3 ± 20 of 4 0.00Down
Heart2 ± 10 of 4 0.01Down
Fat body5 ± 50 of 4 0.01Down
Ovary857 ± 714 of 4 2.00Up
Testis3 ± 00 of 4 0.00Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.01Down
Mated spermatheca7 ± 10 of 4 0.02Down
Adult carcass5 ± 20 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut5 ± 20 of 4 0.01Down
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.00Down
Larval fat body11 ± 31 of 4 0.00Down
Larval trachea3 ± 30 of 4 0.01Down
Larval carcass3 ± 10 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly438 ± 944 of 4

Looking for FBgn0032789. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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