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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032790 through 18771 annotations produced 1 hits



(CG10194):

Annotation Number : CG10194
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032790
Gbrowse : chr2L:19488681-19490083 (-) // 100.0 //
Probeset : 1637978_at
Accessions : protein= NP_609973;, nucleotide= NM_136129;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0032790.
BDGP gene expression has embryonic in situ data for CG10194: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0032790 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain70 ± 24 of 4 0.80Down
Head74 ± 34 of 4 0.90None
Eye82 ± 74 of 4 0.96None
Thoracicoabdominal ganglion74 ± 44 of 4 0.90None
Salivary gland148 ± 134 of 4 1.73Up
Crop125 ± 24 of 4 1.50Up
Midgut161 ± 34 of 4 1.90Up
Tubule135 ± 54 of 4 1.60Up
Hindgut108 ± 24 of 4 1.30Up
Heart159 ± 54 of 4 1.85Up
Fat body205 ± 274 of 4 2.38Up
Ovary141 ± 44 of 4 1.60Up
Testis19 ± 04 of 4 0.20Down
Male accessory glands101 ± 44 of 4 1.20Up
Virgin spermatheca52 ± 44 of 4 0.61Down
Mated spermatheca76 ± 44 of 4 0.88None
Adult carcass130 ± 24 of 4 1.50Up
Larval CNS82 ± 54 of 4 0.96None
Larval Salivary gland230 ± 234 of 4 2.68Up
Larval midgut139 ± 54 of 4 1.63Up
Larval tubule129 ± 34 of 4 1.50Up
Larval hindgut138 ± 34 of 4 1.61Up
Larval fat body146 ± 174 of 4 1.70Up
Larval trachea103 ± 224 of 4 1.21None
Larval carcass107 ± 84 of 4 1.25None
S2 cells (growing)83 ± 14 of 4 0.97None
Whole fly86 ± 34 of 4

Looking for FBgn0032790. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime