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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032793 through 18771 annotations produced 1 hits



(CG10189):

Annotation Number : CG10189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032793
Gbrowse : chr2L:19491646-19492927 (-) // 99.69 //
Probeset : 1627330_at
Accessions : protein= NP_609975;, nucleotide= NM_136131;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structur
Interpro : 0000049 // tRNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred fr
FlyMine data for FBgn0032793.
BioGrid reports that CG10189 interacts with CG10806 CG7856 .
VDRC has 3 RNAi stocks for FBgn0032793 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain66 ± 34 of 4 1.30None
Head53 ± 44 of 4 1.00None
Eye75 ± 34 of 4 1.45Up
Thoracicoabdominal ganglion62 ± 14 of 4 1.20None
Salivary gland62 ± 74 of 4 1.19None
Crop63 ± 24 of 4 1.20None
Midgut52 ± 24 of 4 1.00None
Tubule49 ± 34 of 4 0.90None
Hindgut60 ± 04 of 4 1.20None
Heart61 ± 54 of 4 1.18None
Fat body58 ± 84 of 4 1.12None
Ovary46 ± 44 of 4 0.90None
Testis32 ± 34 of 4 0.60Down
Male accessory glands93 ± 34 of 4 1.80Up
Virgin spermatheca35 ± 04 of 4 0.69None
Mated spermatheca40 ± 24 of 4 0.79None
Adult carcass64 ± 34 of 4 1.20None
Larval CNS61 ± 44 of 4 1.19None
Larval Salivary gland90 ± 14 of 4 1.74Up
Larval midgut54 ± 14 of 4 1.05None
Larval tubule52 ± 34 of 4 1.00None
Larval hindgut50 ± 14 of 4 0.97None
Larval fat body44 ± 34 of 4 0.90None
Larval trachea113 ± 94 of 4 2.18Up
Larval carcass56 ± 34 of 4 1.08None
S2 cells (growing)146 ± 34 of 4 2.82Up
Whole fly51 ± 54 of 4

Looking for FBgn0032793. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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