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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032798 through 18771 annotations produced 1 hits



(CG10132):

Annotation Number : CG10132
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032798
Gbrowse : chr2L:19518786-19525454 (+) // 100.0 //
Probeset : 1623712_at
Accessions : protein= NP_609979;, nucleotide= NM_136135;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
FlyMine data for FBgn0032798.
BDGP gene expression has embryonic in situ data for CG10132: 26 pix of staining in 6 body parts.
BioGrid reports that CG10132 interacts with CG6214 .
TRiP has 1 RNAi stocks for FBgn0032798 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032798 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain312 ± 24 of 412.20Up
Head76 ± 24 of 4 3.00Up
Eye33 ± 24 of 4 1.31None
Thoracicoabdominal ganglion226 ± 64 of 4 8.90Up
Salivary gland9 ± 30 of 4 0.38Down
Crop48 ± 24 of 4 1.90Up
Midgut19 ± 10 of 4 0.80None
Tubule7 ± 10 of 4 0.30Down
Hindgut29 ± 24 of 4 1.10None
Heart48 ± 44 of 4 1.89Up
Fat body18 ± 30 of 4 0.71None
Ovary4 ± 00 of 4 0.20Down
Testis3 ± 10 of 4 0.10Down
Male accessory glands72 ± 74 of 4 2.80Up
Virgin spermatheca11 ± 30 of 4 0.43Down
Mated spermatheca11 ± 20 of 4 0.47Down
Adult carcass43 ± 42 of 4 1.70Up
Larval CNS144 ± 24 of 4 5.67Up
Larval Salivary gland10 ± 32 of 4 0.40Down
Larval midgut12 ± 40 of 4 0.50None
Larval tubule6 ± 41 of 4 0.30Down
Larval hindgut23 ± 34 of 4 0.93None
Larval fat body10 ± 10 of 4 0.40Down
Larval trachea6 ± 30 of 4 0.24Down
Larval carcass81 ± 84 of 4 3.19Up
S2 cells (growing)9 ± 00 of 4 0.37Down
Whole fly25 ± 24 of 4

Looking for FBgn0032798. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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