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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032809 through 18771 annotations produced 1 hits



(CG13078):

Annotation Number : CG13078
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032809
Gbrowse : chr2L:19564337-19565006 (+) // 100.0 //
Probeset : 1630822_at
Accessions : protein= NP_609989;, nucleotide= NM_136145;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0032809.
VDRC has 2 RNAi stocks for FBgn0032809 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.40None
Head6 10 of 4 0.70None
Eye2 10 of 4 0.26None
Thoracicoabdominal ganglion5 22 of 4 0.60None
Salivary gland7 10 of 4 0.80None
Crop7 22 of 4 0.80None
Midgut80 114 of 4 8.80Up
Tubule10 02 of 4 1.10Up
Hindgut9 21 of 4 1.10None
Heart1 00 of 4 0.15Down
Fat body10 53 of 4 1.12None
Ovary3 00 of 4 0.40None
Testis3 10 of 4 0.40None
Male accessory glands12 32 of 4 1.30None
Virgin spermatheca11 22 of 4 1.29None
Mated spermatheca7 10 of 4 0.76None
Adult carcass10 10 of 4 1.20None
Larval CNS5 23 of 4 0.59None
Larval Salivary gland2 10 of 4 0.24Down
Larval midgut108 114 of 411.87Up
Larval tubule5 00 of 4 0.50None
Larval hindgut6 01 of 4 0.65None
Larval fat body7 20 of 4 0.80None
Larval trachea2 20 of 4 0.32None
Larval carcass5 01 of 4 0.65None
S2 cells (growing)20 14 of 4 2.28Up
Whole fly9 21 of 4

Looking for FBgn0032809. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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