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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032813 through 18771 annotations produced 1 hits



(CG10262):

Annotation Number : CG10262
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032813
Gbrowse : chr2L:19583025-19583927 (-) // 100.0 //
Probeset : 1637404_at
Accessions : protein= NP_609994;, nucleotide= NM_136150;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0043626 // PCNA complex // inferred from electronic annota
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0032813.
BioGrid reports that CG10262 interacts with CG2199 CG9573 CG3629 CG11802 CG17180 CG3193 CG8676 CG8841 .
VDRC has 2 RNAi stocks for FBgn0032813 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain56 34 of 4 6.70Up
Head21 14 of 4 2.50Up
Eye55 34 of 4 6.57Up
Thoracicoabdominal ganglion53 34 of 4 6.30Up
Salivary gland34 43 of 4 4.05Up
Crop15 21 of 4 1.90None
Midgut4 20 of 4 0.50None
Tubule24 13 of 4 3.00Up
Hindgut11 20 of 4 1.30None
Heart27 24 of 4 3.29Up
Fat body21 52 of 4 2.56Up
Ovary2 00 of 4 0.30Down
Testis29 14 of 4 3.50Up
Male accessory glands9 20 of 4 1.10None
Virgin spermatheca15 03 of 4 1.80Up
Mated spermatheca19 04 of 4 2.32Up
Adult carcass10 20 of 4 1.20None
Larval CNS24 14 of 4 2.90Up
Larval Salivary gland32 14 of 4 3.81Up
Larval midgut6 30 of 4 0.73None
Larval tubule29 34 of 4 3.50Up
Larval hindgut9 10 of 4 1.07None
Larval fat body40 14 of 4 4.80Up
Larval trachea19 14 of 4 2.38Up
Larval carcass5 20 of 4 0.63None
S2 cells (growing)6 00 of 4 0.75None
Whole fly8 00 of 4

Looking for FBgn0032813. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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