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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032815 through 18771 annotations produced 1 hits



(CG10462):

Annotation Number : CG10462
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032815
Gbrowse : chr2L:19732167-19735948 (-) // 100.0 //
Probeset : 1625530_at
Accessions : protein= NP_001033914; /// NP_001033915; /// NP_609996;, nucleotide= NM_001038825; /// NM_001038826; /// NM_136152;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0032815.
BDGP gene expression has embryonic in situ data for CG10462: 27 pix of staining in 9 body parts.
Homophila reports that CG10462 is a close match (2e-11) to human gene HTX;HTX1;ZIC3 (NP_003404), a gene associated with Heterotaxy, X-linked visceral, 306955 (3).
BioGrid reports that CG10462 interacts with CG3879 CG10694 CG17592 CG2116 CG3847 CG7911 .
TRiP has 2 RNAi stocks for FBgn0032815 available for purchase.
VDRC has 2 RNAi stocks for FBgn0032815 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain33 ± 34 of 4 0.30Down
Head78 ± 34 of 4 0.80Down
Eye361 ± 154 of 4 3.55Up
Thoracicoabdominal ganglion57 ± 34 of 4 0.60Down
Salivary gland162 ± 74 of 4 1.59Up
Crop118 ± 84 of 4 1.20None
Midgut84 ± 34 of 4 0.80Down
Tubule221 ± 164 of 4 2.20Up
Hindgut97 ± 44 of 4 1.00None
Heart112 ± 64 of 4 1.11None
Fat body109 ± 134 of 4 1.07None
Ovary238 ± 34 of 4 2.30Up
Testis50 ± 44 of 4 0.50Down
Male accessory glands176 ± 124 of 4 1.70Up
Virgin spermatheca293 ± 34 of 4 2.88Up
Mated spermatheca280 ± 194 of 4 2.75Up
Adult carcass80 ± 54 of 4 0.80Down
Larval CNS144 ± 164 of 4 1.42Up
Larval Salivary gland169 ± 54 of 4 1.66Up
Larval midgut79 ± 14 of 4 0.78Down
Larval tubule117 ± 14 of 4 1.10Up
Larval hindgut130 ± 24 of 4 1.28Up
Larval fat body71 ± 14 of 4 0.70Down
Larval trachea229 ± 224 of 4 2.25Up
Larval carcass114 ± 64 of 4 1.13None
S2 cells (growing)171 ± 34 of 4 1.68Up
Whole fly101 ± 14 of 4

Looking for FBgn0032815. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime