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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032816 through 18771 annotations produced 1 hits



CG10447 (Nf-YB):

Annotation Number : CG10447
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032816
Gbrowse : chr2L:19736054-19737088 (+) // 99.46 //
Probeset : 1623453_at
Accessions : protein= NP_609997;, nucleotide= NM_136153;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0032816.
BioGrid reports that CG10447 interacts with CG11301 .
VDRC has 2 RNAi stocks for FBgn0032816 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain223 44 of 4 2.00Up
Head126 54 of 4 1.10None
Eye169 84 of 4 1.49Up
Thoracicoabdominal ganglion202 44 of 4 1.80Up
Salivary gland131 54 of 4 1.16Up
Crop237 54 of 4 2.10Up
Midgut103 24 of 4 0.90Down
Tubule136 54 of 4 1.20Up
Hindgut100 24 of 4 0.90Down
Heart125 64 of 4 1.10None
Fat body80 24 of 4 0.71Down
Ovary202 54 of 4 1.80Up
Testis39 24 of 4 0.30Down
Male accessory glands64 24 of 4 0.60Down
Virgin spermatheca90 14 of 4 0.79Down
Mated spermatheca97 24 of 4 0.86Down
Adult carcass73 44 of 4 0.60Down
Larval CNS366 214 of 4 3.22Up
Larval Salivary gland117 64 of 4 1.03None
Larval midgut83 34 of 4 0.73Down
Larval tubule175 24 of 4 1.50Up
Larval hindgut83 34 of 4 0.73Down
Larval fat body119 74 of 4 1.10None
Larval trachea187 154 of 4 1.65Up
Larval carcass85 24 of 4 0.75Down
S2 cells (growing)151 24 of 4 1.33Up
Whole fly113 24 of 4

Looking for FBgn0032816. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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