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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032821 through 18771 annotations produced 1 hits

CdGAPr (CdGAPr):

Annotation Number : CG10538
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032821
Gbrowse : chr2L:19775091-19791900 (-) // 100.0 //
Probeset : 1632537_at
Accessions : protein= NP_001163017; /// NP_001163018; /// NP_610002;, nucleotide= NM_001169546; /// NM_001169547; /// NM_136158;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005096 // GTPase activator activity // inferred from sequence or structural similarity /// 0005096 // GTPase activator
FlyMine data for FBgn0032821.
Homophila reports that CG10538 is a close match (1e-12) to human gene DLC1 (NP_872584), a gene associated with Colorectal cancer, somatic (3).
BioGrid reports that CG10538 interacts with CG15479 .
TRiP has 1 RNAi stocks for FBgn0032821 available for purchase.
VDRC has 1 RNAi stocks for FBgn0032821 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 04 of 413.70Up
Head3 00 of 4 4.30Up
Eye8 00 of 4 9.31Up
Thoracicoabdominal ganglion10 13 of 411.40Up
Salivary gland2 00 of 4 2.47None
Crop5 01 of 4 6.40Up
Midgut0 00 of 4 0.30None
Tubule1 00 of 4 1.20None
Hindgut1 00 of 4 1.80None
Heart3 10 of 4 3.78None
Fat body3 10 of 4 3.64Up
Ovary0 00 of 4 1.00None
Testis1 00 of 4 1.80None
Male accessory glands3 10 of 4 3.70None
Virgin spermatheca2 10 of 4 2.64None
Mated spermatheca4 11 of 4 4.83Up
Adult carcass2 00 of 4 2.70None
Larval CNS18 64 of 420.67Up
Larval Salivary gland2 10 of 4 2.97None
Larval midgut0 00 of 4 0.97None
Larval tubule1 00 of 4 1.20None
Larval hindgut3 00 of 4 3.78Up
Larval fat body0 00 of 4 0.40None
Larval trachea5 41 of 4 6.06None
Larval carcass2 00 of 4 2.97None
S2 cells (growing)3 11 of 4 3.50None
Whole fly0 00 of 4

Looking for FBgn0032821. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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