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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032822 through 18771 annotations produced 1 hits



(CG10466):

Annotation Number : CG10466
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032822
Gbrowse : chr2L:19792189-19792846 (+) // 100.0 //
Probeset : 1627627_at
Accessions : protein= NP_610003;, nucleotide= NM_136159;
Pathway : via spliceosome // inferred by curator"
Interpro : 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferre
FlyMine data for FBgn0032822.
BioGrid reports that CG10466 interacts with CG14145 CG5280 .
VDRC has 3 RNAi stocks for FBgn0032822 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 ± 14 of 4 0.90None
Head35 ± 04 of 4 0.60Down
Eye60 ± 24 of 4 0.95None
Thoracicoabdominal ganglion61 ± 44 of 4 1.00None
Salivary gland80 ± 104 of 4 1.26None
Crop76 ± 34 of 4 1.20None
Midgut46 ± 24 of 4 0.70Down
Tubule45 ± 34 of 4 0.70Down
Hindgut41 ± 14 of 4 0.70Down
Heart54 ± 34 of 4 0.86None
Fat body39 ± 84 of 4 0.62Down
Ovary148 ± 34 of 4 2.30Up
Testis87 ± 34 of 4 1.40Up
Male accessory glands46 ± 44 of 4 0.70Down
Virgin spermatheca53 ± 34 of 4 0.84None
Mated spermatheca66 ± 84 of 4 1.05None
Adult carcass32 ± 24 of 4 0.50Down
Larval CNS108 ± 74 of 4 1.70Up
Larval Salivary gland140 ± 44 of 4 2.20Up
Larval midgut48 ± 24 of 4 0.76Down
Larval tubule190 ± 54 of 4 3.00Up
Larval hindgut54 ± 64 of 4 0.86None
Larval fat body49 ± 34 of 4 0.80Down
Larval trachea78 ± 144 of 4 1.23None
Larval carcass48 ± 44 of 4 0.76Down
S2 cells (growing)52 ± 14 of 4 0.82None
Whole fly63 ± 34 of 4

Looking for FBgn0032822. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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