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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032824 through 18771 annotations produced 1 hits



(CG13962):

Annotation Number : CG13962
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032824
Gbrowse : chr2L:19813858-19814317 (-) // 100.0 //
Probeset : 1633811_at
Accessions : protein= NP_610004;, nucleotide= NM_136160;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032824.
BioGrid reports that CG13962 interacts with CG14354 CG4386 CG2210 CG8933 .
VDRC has 2 RNAi stocks for FBgn0032824 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 01 of 4 0.90None
Head6 10 of 4 1.10None
Eye5 11 of 4 1.09None
Thoracicoabdominal ganglion5 12 of 4 1.00None
Salivary gland6 10 of 4 1.17None
Crop4 11 of 4 0.70None
Midgut6 12 of 4 1.20None
Tubule4 00 of 4 0.80Down
Hindgut3 10 of 4 0.60None
Heart6 12 of 4 1.15None
Fat body5 10 of 4 1.00None
Ovary3 00 of 4 0.60None
Testis3 00 of 4 0.60None
Male accessory glands10 00 of 4 2.00Up
Virgin spermatheca5 11 of 4 1.10None
Mated spermatheca7 21 of 4 1.42None
Adult carcass9 10 of 4 1.80None
Larval CNS4 12 of 4 0.89None
Larval Salivary gland40 34 of 4 7.62Up
Larval midgut10 02 of 4 1.90Up
Larval tubule9 23 of 4 1.90None
Larval hindgut62 184 of 411.87None
Larval fat body3421 5684 of 4648.60Up
Larval trachea25 264 of 4 4.83None
Larval carcass29 64 of 4 5.57Up
S2 cells (growing)4 21 of 4 0.90None
Whole fly5 00 of 4

Looking for FBgn0032824. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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