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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032833 through 18771 annotations produced 1 hits



Cytochrome c oxidase IV (CG10664):

Annotation Number : CG10664
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032833
Gbrowse : chr2L:19958711-19960065 (+) // 100.0 //
Probeset : 1640797_at
Accessions : protein= NP_610013; /// NP_995732;, nucleotide= NM_136169; /// NM_206010;
Pathway : cytochrome c to oxygen // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferre
Interpro : 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005751 // mitochondrial respiratory cha
FlyMine data for FBgn0032833.
BDGP gene expression has embryonic in situ data for CG10664: 10 pix of staining in 17 body parts.
BioGrid reports that CG10664 interacts with CG11790 CG11390 CG11769 CG4778 CG5050 CG5642 CG11719 CG18396 CG1133 .
VDRC has 2 RNAi stocks for FBgn0032833 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2768 674 of 4 1.00None
Head3078 824 of 4 1.10None
Eye4700 2684 of 4 1.70Up
Thoracicoabdominal ganglion3687 994 of 4 1.30Up
Salivary gland3344 494 of 4 1.21Up
Crop3172 1794 of 4 1.10None
Midgut3546 1174 of 4 1.30Up
Tubule5753 1504 of 4 2.10Up
Hindgut4401 1574 of 4 1.60Up
Heart3786 1844 of 4 1.37Up
Fat body3158 1054 of 4 1.14None
Ovary1619 394 of 4 0.60Down
Testis402 44 of 4 0.10Down
Male accessory glands3938 1254 of 4 1.40Up
Virgin spermatheca4244 1614 of 4 1.54Up
Mated spermatheca3934 2784 of 4 1.42Up
Adult carcass4858 1394 of 4 1.80Up
Larval CNS1744 1144 of 4 0.63Down
Larval Salivary gland2458 394 of 4 0.89None
Larval midgut3569 574 of 4 1.29Up
Larval tubule2877 2554 of 4 1.00None
Larval hindgut3883 814 of 4 1.41Up
Larval fat body1130 1404 of 4 0.40Down
Larval trachea1658 1224 of 4 0.60Down
Larval carcass3451 2704 of 4 1.25None
S2 cells (growing)1464 354 of 4 0.53Down
Whole fly2761 1544 of 4

Looking for FBgn0032833. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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