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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032843 through 18771 annotations produced 1 hits



(CG10730):

Annotation Number : CG10730
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032843
Gbrowse : chr2L:20070080-20072209 (-) // 100.0 //
Probeset : 1632829_at
Accessions : protein= NP_610021;, nucleotide= NM_136177;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0032843.
BDGP gene expression has embryonic in situ data for CG10730: 4 pix of staining in 1 body parts.
BioGrid reports that CG10730 interacts with CG11901 .
VDRC has 2 RNAi stocks for FBgn0032843 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head6 ± 00 of 4 0.20Down
Eye4 ± 11 of 4 0.12Down
Thoracicoabdominal ganglion8 ± 02 of 4 0.20Down
Salivary gland12 ± 30 of 4 0.34Down
Crop10 ± 00 of 4 0.30Down
Midgut9 ± 20 of 4 0.20Down
Tubule9 ± 00 of 4 0.20Down
Hindgut7 ± 00 of 4 0.20Down
Heart6 ± 10 of 4 0.16Down
Fat body7 ± 30 of 4 0.20Down
Ovary1 ± 00 of 4 0.00Down
Testis97 ± 94 of 4 2.60Up
Male accessory glands3152 ± 1314 of 483.40Up
Virgin spermatheca8 ± 11 of 4 0.24Down
Mated spermatheca7 ± 10 of 4 0.21Down
Adult carcass5 ± 20 of 4 0.10Down
Larval CNS5 ± 03 of 4 0.16Down
Larval Salivary gland4 ± 10 of 4 0.11Down
Larval midgut5 ± 10 of 4 0.14Down
Larval tubule9 ± 13 of 4 0.20Down
Larval hindgut5 ± 11 of 4 0.14Down
Larval fat body15 ± 32 of 4 0.40Down
Larval trachea4 ± 22 of 4 0.12Down
Larval carcass18 ± 01 of 4 0.48Down
S2 cells (growing)8 ± 03 of 4 0.22Down
Whole fly37 ± 44 of 4

Looking for FBgn0032843. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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