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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032849 through 18771 annotations produced 1 hits



mitochondrial ribosomal protein S18B (mRpS18B):

Annotation Number : CG10757
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032849
Gbrowse : chr2L:20096430-20098065 (-) // 100.0 //
Probeset : 1625136_s_at
Accessions : protein= NP_523606; /// NP_724248;, nucleotide= NM_078882; /// NM_165321;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005763 // mitochondrial small ribosomal subunit //
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0032849.
BDGP gene expression has embryonic in situ data for mRpS18b: 4 pix of staining in 1 body parts.
BioGrid reports that CG10757 interacts with CG12081 CG6443 .
VDRC has 2 RNAi stocks for FBgn0032849 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain182 ± 34 of 4 1.00None
Head125 ± 84 of 4 0.70Down
Eye107 ± 44 of 4 0.57Down
Thoracicoabdominal ganglion205 ± 44 of 4 1.10None
Salivary gland140 ± 54 of 4 0.74Down
Crop130 ± 04 of 4 0.70Down
Midgut136 ± 44 of 4 0.70Down
Tubule177 ± 84 of 4 0.90None
Hindgut169 ± 94 of 4 0.90None
Heart105 ± 74 of 4 0.56Down
Fat body94 ± 54 of 4 0.50Down
Ovary304 ± 84 of 4 1.60Up
Testis165 ± 84 of 4 0.90None
Male accessory glands186 ± 134 of 4 1.00None
Virgin spermatheca94 ± 64 of 4 0.50Down
Mated spermatheca88 ± 124 of 4 0.47Down
Adult carcass115 ± 44 of 4 0.60Down
Larval CNS267 ± 194 of 4 1.42Up
Larval Salivary gland205 ± 104 of 4 1.09None
Larval midgut112 ± 114 of 4 0.60Down
Larval tubule88 ± 34 of 4 0.50Down
Larval hindgut203 ± 144 of 4 1.08None
Larval fat body84 ± 64 of 4 0.40Down
Larval trachea249 ± 354 of 4 1.33Up
Larval carcass150 ± 124 of 4 0.80Down
S2 cells (growing)212 ± 64 of 4 1.13None
Whole fly188 ± 74 of 4

Looking for FBgn0032849. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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