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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0032850 through 18771 annotations produced 1 hits

Kua (Kua):

Annotation Number : CG10723
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032850
Gbrowse : chr2L:20100946-20102516 (+) // 100.0 //
Probeset : 1629215_at
Accessions : protein= NP_610026;, nucleotide= NM_136182;
FlyMine data for FBgn0032850.
VDRC has 3 RNAi stocks for FBgn0032850 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 14 of 4 0.50Down
Head20 34 of 4 1.10None
Eye2 00 of 4 0.15Down
Thoracicoabdominal ganglion16 44 of 4 0.90None
Salivary gland7 30 of 4 0.39Down
Crop3 10 of 4 0.20Down
Midgut35 24 of 4 1.90Up
Tubule160 54 of 4 8.60Up
Hindgut26 24 of 4 1.40Up
Heart3 11 of 4 0.21Down
Fat body12 23 of 4 0.69None
Ovary2 10 of 4 0.10Down
Testis103 24 of 4 5.60Up
Male accessory glands6 00 of 4 0.30Down
Virgin spermatheca5 10 of 4 0.27Down
Mated spermatheca5 20 of 4 0.28Down
Adult carcass17 42 of 4 0.90None
Larval CNS4 12 of 4 0.22Down
Larval Salivary gland5 00 of 4 0.28Down
Larval midgut68 64 of 4 3.69Up
Larval tubule10 20 of 4 0.60Down
Larval hindgut23 24 of 4 1.24None
Larval fat body21 73 of 4 1.10None
Larval trachea1 10 of 4 0.10Down
Larval carcass4 10 of 4 0.24Down
S2 cells (growing)1 00 of 4 0.10Down
Whole fly18 24 of 4

Looking for FBgn0032850. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime