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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032856 through 18771 annotations produced 1 hits



(CG16798):

Annotation Number : CG16798
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032856
Gbrowse : chr2L:20376982-20382355 (-) // 100.0 //
Probeset : 1631692_at
Accessions : protein= NP_610030;, nucleotide= NM_136186;
FlyMine data for FBgn0032856.
BDGP gene expression has embryonic in situ data for CG16798: 30 pix of staining in 9 body parts.
VDRC has 1 RNAi stocks for FBgn0032856 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 1.00None
Head4 10 of 4 1.40None
Eye5 20 of 4 1.53None
Thoracicoabdominal ganglion4 10 of 4 1.40None
Salivary gland11 10 of 4 3.47Up
Crop1 00 of 4 0.40None
Midgut3 10 of 4 1.00None
Tubule2 00 of 4 0.70None
Hindgut1 00 of 4 0.40None
Heart0 00 of 4 0.11None
Fat body0 00 of 4 0.27None
Ovary0 00 of 4 0.20None
Testis1 00 of 4 0.40None
Male accessory glands2 10 of 4 0.80None
Virgin spermatheca1 00 of 4 0.47None
Mated spermatheca1 00 of 4 0.39None
Adult carcass3 10 of 4 1.00None
Larval CNS0 00 of 4 0.22None
Larval Salivary gland1 00 of 4 0.53None
Larval midgut9 20 of 4 2.89None
Larval tubule2 00 of 4 0.70None
Larval hindgut0 00 of 4 0.20None
Larval fat body2 00 of 4 0.70None
Larval trachea87 74 of 425.80Up
Larval carcass3 10 of 4 1.17None
S2 cells (growing)1 00 of 4 0.31None
Whole fly3 10 of 4

Looking for FBgn0032856. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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