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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032857 through 18771 annotations produced 1 hits



(CG10947):

Annotation Number : CG10947
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032857
Gbrowse : chr2L:20386055-20399394 (-) // 100.0 //
Probeset : 1635943_s_at
Accessions : protein= NP_724261; /// NP_724262;, nucleotide= NM_165328; /// NM_165329;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032857.
BioGrid reports that CG10947 interacts with CG32354 .
VDRC has 2 RNAi stocks for FBgn0032857 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 14 of 4 1.10None
Head38 ± 64 of 4 1.30None
Eye30 ± 14 of 4 1.00None
Thoracicoabdominal ganglion29 ± 43 of 4 1.00None
Salivary gland2 ± 10 of 4 0.08Down
Crop47 ± 44 of 4 1.60Up
Midgut11 ± 20 of 4 0.40Down
Tubule0 ± 00 of 4 0.00Down
Hindgut9 ± 30 of 4 0.30Down
Heart0 ± 00 of 4 0.02Down
Fat body1 ± 00 of 4 0.04Down
Ovary0 ± 00 of 4 0.00Down
Testis376 ± 94 of 412.40Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca0 ± 00 of 4 0.02Down
Mated spermatheca0 ± 00 of 4 0.02Down
Adult carcass42 ± 64 of 4 1.40None
Larval CNS10 ± 10 of 4 0.34Down
Larval Salivary gland61 ± 54 of 4 2.03Up
Larval midgut8 ± 30 of 4 0.29Down
Larval tubule12 ± 20 of 4 0.40Down
Larval hindgut6 ± 20 of 4 0.20Down
Larval fat body22 ± 81 of 4 0.80None
Larval trachea1 ± 10 of 4 0.04Down
Larval carcass3 ± 20 of 4 0.12Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly30 ± 24 of 4

Looking for FBgn0032857. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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