FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0032858 through 18771 annotations produced 1 hits

(CG10949):

Annotation Number : CG10949
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032858
Gbrowse : chr2L:20415170-20416918 (-) // 100.0 //
Probeset : 1632643_at
Accessions : protein= NP_610032;, nucleotide= NM_136188;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0032858.
BDGP gene expression has embryonic in situ data for CG10949: 6 pix of staining in 1 body parts.
BioGrid reports that CG10949 interacts with CG14315 CG2216 CG5711 CG6683 CG9948 CG12729 CG4821 .
TRiP has 1 RNAi stocks for FBgn0032858 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032858 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	92 ± 1	4 of 4	2.20	Up
Head	32 ± 2	4 of 4	0.70	Down
Eye	39 ± 0	4 of 4	0.92	None
Thoracicoabdominal ganglion	94 ± 1	4 of 4	2.20	Up
Salivary gland	52 ± 5	4 of 4	1.23	None
Crop	42 ± 2	4 of 4	1.00	None
Midgut	46 ± 2	4 of 4	1.10	None
Tubule	50 ± 2	4 of 4	1.20	Up
Hindgut	33 ± 2	4 of 4	0.80	Down
Heart	17 ± 1	4 of 4	0.41	Down
Fat body	19 ± 6	2 of 4	0.45	Down
Ovary	103 ± 5	4 of 4	2.40	Up
Testis	26 ± 0	4 of 4	0.60	Down
Male accessory glands	26 ± 4	4 of 4	0.60	Down
Virgin spermatheca	33 ± 1	4 of 4	0.78	Down
Mated spermatheca	36 ± 3	4 of 4	0.84	None
Adult carcass	22 ± 3	0 of 4	0.50	Down
Larval CNS	58 ± 3	4 of 4	1.37	Up
Larval Salivary gland	36 ± 3	4 of 4	0.84	None
Larval midgut	35 ± 2	4 of 4	0.83	Down
Larval tubule	57 ± 3	4 of 4	1.30	Up
Larval hindgut	29 ± 2	4 of 4	0.69	Down
Larval fat body	17 ± 1	0 of 4	0.40	Down
Larval trachea	40 ± 5	4 of 4	0.94	None
Larval carcass	25 ± 1	3 of 4	0.58	Down
S2 cells (growing)	62 ± 3	4 of 4	1.47	Up
Whole fly	42 ± 1	4 of 4

Looking for FBgn0032858. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720