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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0032860 through 18771 annotations produced 1 hits



(CG15130):

Annotation Number : CG15130
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032860
Gbrowse : chr2L:20423184-20424599 (-) // 100.0 //
Probeset : 1640622_at
Accessions : protein= NP_610034;, nucleotide= NM_136190;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032860.
BioGrid reports that CG15130 interacts with CG6726 .
VDRC has 1 RNAi stocks for FBgn0032860 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.20None
Head5 ± 20 of 4 2.50None
Eye3 ± 10 of 4 1.86None
Thoracicoabdominal ganglion6 ± 10 of 4 3.10None
Salivary gland6 ± 10 of 4 3.24None
Crop2 ± 00 of 4 1.20None
Midgut5 ± 10 of 4 2.60None
Tubule2 ± 00 of 4 1.40None
Hindgut5 ± 10 of 4 2.60None
Heart6 ± 02 of 4 2.93Up
Fat body4 ± 20 of 4 1.98None
Ovary1 ± 00 of 4 0.50Down
Testis4 ± 10 of 4 1.90None
Male accessory glands9 ± 10 of 4 4.60Up
Virgin spermatheca4 ± 20 of 4 2.19None
Mated spermatheca4 ± 10 of 4 2.19None
Adult carcass7 ± 40 of 4 3.50None
Larval CNS1 ± 00 of 4 0.61Down
Larval Salivary gland7 ± 00 of 4 3.40Up
Larval midgut6 ± 20 of 4 2.95None
Larval tubule3 ± 10 of 4 1.40None
Larval hindgut2 ± 10 of 4 1.15None
Larval fat body3 ± 00 of 4 1.40None
Larval trachea4 ± 30 of 4 2.08None
Larval carcass5 ± 11 of 4 2.42None
S2 cells (growing)16 ± 02 of 4 7.72Up
Whole fly2 ± 00 of 4

Looking for FBgn0032860. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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